| Full name: RNA binding motif protein 39 | Alias Symbol: CC1.3|HCC1|CAPER|fSAP59|CAPERalpha | ||
| Type: protein-coding gene | Cytoband: 20q11.22 | ||
| Entrez ID: 9584 | HGNC ID: HGNC:15923 | Ensembl Gene: ENSG00000131051 | OMIM ID: 604739 |
| Drug and gene relationship at DGIdb | |||
Screen Evidence:
| |||
Expression of RBM39:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | RBM39 | 9584 | 207941_s_at | 0.2324 | 0.6393 | |
| GSE20347 | RBM39 | 9584 | 207941_s_at | 0.3315 | 0.0029 | |
| GSE23400 | RBM39 | 9584 | 207941_s_at | 0.1296 | 0.1053 | |
| GSE26886 | RBM39 | 9584 | 207941_s_at | -0.0548 | 0.7976 | |
| GSE29001 | RBM39 | 9584 | 207941_s_at | 0.2459 | 0.1890 | |
| GSE38129 | RBM39 | 9584 | 207941_s_at | 0.1706 | 0.1980 | |
| GSE45670 | RBM39 | 9584 | 208720_s_at | 0.1193 | 0.2374 | |
| GSE53622 | RBM39 | 9584 | 43804 | 0.3947 | 0.0000 | |
| GSE53624 | RBM39 | 9584 | 43804 | 0.4806 | 0.0000 | |
| GSE63941 | RBM39 | 9584 | 207941_s_at | -0.2402 | 0.5218 | |
| GSE77861 | RBM39 | 9584 | 207941_s_at | 0.2192 | 0.3839 | |
| GSE97050 | RBM39 | 9584 | A_33_P3324651 | 0.2174 | 0.3292 | |
| SRP007169 | RBM39 | 9584 | RNAseq | -0.2726 | 0.3681 | |
| SRP008496 | RBM39 | 9584 | RNAseq | 0.1536 | 0.5586 | |
| SRP064894 | RBM39 | 9584 | RNAseq | 0.1126 | 0.4165 | |
| SRP133303 | RBM39 | 9584 | RNAseq | 0.1734 | 0.1617 | |
| SRP159526 | RBM39 | 9584 | RNAseq | 0.0136 | 0.9644 | |
| SRP193095 | RBM39 | 9584 | RNAseq | -0.0077 | 0.9304 | |
| SRP219564 | RBM39 | 9584 | RNAseq | 0.2433 | 0.5472 | |
| TCGA | RBM39 | 9584 | RNAseq | -0.0454 | 0.2637 |
Upregulated datasets: 0; Downregulated datasets: 0.
Survival by RBM39 expression:
 |  |  |
| GSE53622 | GSE53624 | TCGA |
Note: Click image to view full size file.
Copy number change of RBM39:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | RBM39 | 9584 | 15 | 1 | 14 | |
| GSE20123 | RBM39 | 9584 | 15 | 1 | 14 | |
| GSE43470 | RBM39 | 9584 | 12 | 0 | 31 | |
| GSE46452 | RBM39 | 9584 | 29 | 0 | 30 | |
| GSE47630 | RBM39 | 9584 | 25 | 0 | 15 | |
| GSE54993 | RBM39 | 9584 | 0 | 17 | 53 | |
| GSE54994 | RBM39 | 9584 | 24 | 0 | 29 | |
| GSE60625 | RBM39 | 9584 | 0 | 0 | 11 | |
| GSE74703 | RBM39 | 9584 | 11 | 0 | 25 | |
| GSE74704 | RBM39 | 9584 | 11 | 0 | 9 | |
| TCGA | RBM39 | 9584 | 49 | 3 | 44 |
Total number of gains: 191; Total number of losses: 22; Total Number of normals: 275.
Somatic mutations of RBM39:
Generating mutation plots.
Highly correlated genes for RBM39:
Showing top 20/507 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| RBM39 | ZNF234 | 0.810564 | 3 | 0 | 3 |
| RBM39 | IFIT5 | 0.797525 | 3 | 0 | 3 |
| RBM39 | ERGIC1 | 0.757737 | 3 | 0 | 3 |
| RBM39 | IFIT1 | 0.749003 | 3 | 0 | 3 |
| RBM39 | TAP1 | 0.744139 | 3 | 0 | 3 |
| RBM39 | TM2D2 | 0.7434 | 3 | 0 | 3 |
| RBM39 | ACBD6 | 0.739169 | 3 | 0 | 3 |
| RBM39 | DDX60L | 0.737803 | 3 | 0 | 3 |
| RBM39 | ZNF25 | 0.729873 | 3 | 0 | 3 |
| RBM39 | INTS10 | 0.728801 | 3 | 0 | 3 |
| RBM39 | ZNF250 | 0.726919 | 3 | 0 | 3 |
| RBM39 | RP9 | 0.7198 | 3 | 0 | 3 |
| RBM39 | INTS12 | 0.718494 | 4 | 0 | 3 |
| RBM39 | SUGP2 | 0.713166 | 3 | 0 | 3 |
| RBM39 | ARHGEF33 | 0.712862 | 3 | 0 | 3 |
| RBM39 | TRAPPC10 | 0.712303 | 3 | 0 | 3 |
| RBM39 | ZNF567 | 0.710856 | 3 | 0 | 3 |
| RBM39 | PDCD5 | 0.710525 | 4 | 0 | 3 |
| RBM39 | SARNP | 0.70392 | 3 | 0 | 3 |
| RBM39 | SLC25A28 | 0.702617 | 4 | 0 | 3 |
For details and further investigation, click here
