RBM42

 

Full name: RNA binding motif protein 42 Alias Symbol: MGC10433
Type: protein-coding gene Cytoband: 19q13.12
Entrez ID: 79171 HGNC ID: HGNC:28117 Ensembl Gene: ENSG00000126254 OMIM ID: 613232
Drug and gene relationship at DGIdb
Screen Evidence:

 

Expression of RBM42:

 

Dataset Gene EntrezID Probe Log2FC Adj.pValue Expression
GSE17351 RBM42 79171 205740_s_at 0.3403 0.3542
GSE20347 RBM42 79171 205740_s_at 0.1591 0.4090
GSE23400 RBM42 79171 205740_s_at 0.2211 0.0032
GSE26886 RBM42 79171 205740_s_at 0.1082 0.5199
GSE29001 RBM42 79171 205740_s_at 0.2188 0.3905
GSE38129 RBM42 79171 205740_s_at 0.2037 0.1186
GSE45670 RBM42 79171 205740_s_at 0.3005 0.0196
GSE53622 RBM42 79171 170996 0.0254 0.7226
GSE53624 RBM42 79171 170996 0.3483 0.0000
GSE63941 RBM42 79171 205740_s_at 2.0062 0.0016
GSE77861 RBM42 79171 205740_s_at 0.5255 0.0890
GSE97050 RBM42 79171 A_23_P90444 0.1042 0.6701
SRP007169 RBM42 79171 RNAseq 0.7659 0.2576
SRP008496 RBM42 79171 RNAseq -0.7915 0.0005
SRP064894 RBM42 79171 RNAseq 0.7581 0.0158
SRP133303 RBM42 79171 RNAseq 0.1762 0.4140
SRP159526 RBM42 79171 RNAseq 0.4433 0.1489
SRP193095 RBM42 79171 RNAseq 0.2508 0.0674
SRP219564 RBM42 79171 RNAseq 0.0778 0.7863
TCGA RBM42 79171 RNAseq 0.1699 0.0019

Upregulated datasets: 1; Downregulated datasets: 0.  

 

Survival by RBM42 expression:

 

GSE53622GSE53624TCGA

 

Note: Click image to view full size file.  

Copy number change of RBM42:

 

Dataset Gene EntrezID Gain Loss Normal Detail
GSE15526 RBM42 79171 6 4 20
GSE20123 RBM42 79171 6 3 21
GSE43470 RBM42 79171 3 7 33
GSE46452 RBM42 79171 48 1 10
GSE47630 RBM42 79171 9 5 26
GSE54993 RBM42 79171 17 3 50
GSE54994 RBM42 79171 7 9 37
GSE60625 RBM42 79171 9 0 2
GSE74703 RBM42 79171 3 4 29
GSE74704 RBM42 79171 6 1 13
TCGA RBM42 79171 22 10 64

Total number of gains: 136; Total number of losses: 47; Total Number of normals: 305.  

 

Somatic mutations of RBM42:

 

Generating mutation plots.

 

Highly correlated genes for RBM42:

 

Showing top 20/278 corelated genes with mean PCC>0.5.
Gene1 Gene2 Mean PCC Num. Datasets Num. PCC<0 Num. PCC>0.5
RBM42BRPF10.744795303
RBM42SUPT5H0.69243312010
RBM42HAGHL0.690649303
RBM42EMC100.684787505
RBM42PTGIR0.678768303
RBM42MBD60.674938403
RBM42MAPK150.671094303
RBM42HNRNPK0.66959403
RBM42FGFR40.664378303
RBM42ITPK1-AS10.660099303
RBM42MARK40.651308604
RBM42ZMYND150.645761303
RBM42LIN370.643818807
RBM42STK110.642759303
RBM42NPIPA10.641995303
RBM42PKP10.641363303
RBM42GPR270.641292303
RBM42SDHAF10.63960312011
RBM42SLC7A80.637829303
RBM42BEND30.635971606

For details and further investigation, click here