| Full name: ring finger protein 38 | Alias Symbol: | ||
| Type: protein-coding gene | Cytoband: 9p13.2 | ||
| Entrez ID: 152006 | HGNC ID: HGNC:18052 | Ensembl Gene: ENSG00000137075 | OMIM ID: 612488 |
| Drug and gene relationship at DGIdb | |||
Expression of RNF38:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | RNF38 | 152006 | 218528_s_at | -0.8914 | 0.2058 | |
| GSE20347 | RNF38 | 152006 | 218528_s_at | -0.6093 | 0.0010 | |
| GSE23400 | RNF38 | 152006 | 218528_s_at | -0.2442 | 0.0128 | |
| GSE26886 | RNF38 | 152006 | 218528_s_at | -1.0339 | 0.0005 | |
| GSE29001 | RNF38 | 152006 | 218528_s_at | -0.3839 | 0.2071 | |
| GSE38129 | RNF38 | 152006 | 218528_s_at | -0.6941 | 0.0000 | |
| GSE45670 | RNF38 | 152006 | 218528_s_at | -0.7254 | 0.0004 | |
| GSE53622 | RNF38 | 152006 | 18603 | -0.6788 | 0.0000 | |
| GSE53624 | RNF38 | 152006 | 132474 | -0.4914 | 0.0000 | |
| GSE63941 | RNF38 | 152006 | 218528_s_at | -0.8895 | 0.0294 | |
| GSE77861 | RNF38 | 152006 | 218528_s_at | -0.7068 | 0.0361 | |
| GSE97050 | RNF38 | 152006 | A_24_P4334 | -0.8925 | 0.0545 | |
| SRP007169 | RNF38 | 152006 | RNAseq | -0.7067 | 0.0360 | |
| SRP008496 | RNF38 | 152006 | RNAseq | -0.2678 | 0.2206 | |
| SRP064894 | RNF38 | 152006 | RNAseq | -0.4244 | 0.0294 | |
| SRP133303 | RNF38 | 152006 | RNAseq | -0.5779 | 0.0016 | |
| SRP159526 | RNF38 | 152006 | RNAseq | -0.7557 | 0.0001 | |
| SRP193095 | RNF38 | 152006 | RNAseq | -0.4996 | 0.0000 | |
| SRP219564 | RNF38 | 152006 | RNAseq | -0.2857 | 0.3859 | |
| TCGA | RNF38 | 152006 | RNAseq | -0.1791 | 0.0017 |
Upregulated datasets: 0; Downregulated datasets: 1.
Survival by RNF38 expression:
 |  |  |
| GSE53622 | GSE53624 | TCGA |
Note: Click image to view full size file.
Copy number change of RNF38:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | RNF38 | 152006 | 3 | 11 | 16 | |
| GSE20123 | RNF38 | 152006 | 3 | 11 | 16 | |
| GSE43470 | RNF38 | 152006 | 3 | 10 | 30 | |
| GSE46452 | RNF38 | 152006 | 6 | 15 | 38 | |
| GSE47630 | RNF38 | 152006 | 1 | 20 | 19 | |
| GSE54993 | RNF38 | 152006 | 6 | 0 | 64 | |
| GSE54994 | RNF38 | 152006 | 5 | 12 | 36 | |
| GSE60625 | RNF38 | 152006 | 0 | 0 | 11 | |
| GSE74703 | RNF38 | 152006 | 2 | 7 | 27 | |
| GSE74704 | RNF38 | 152006 | 0 | 9 | 11 | |
| TCGA | RNF38 | 152006 | 14 | 44 | 38 |
Total number of gains: 43; Total number of losses: 139; Total Number of normals: 306.
Somatic mutations of RNF38:
Generating mutation plots.
Highly correlated genes for RNF38:
Showing top 20/1243 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| RNF38 | ZCCHC9 | 0.802399 | 3 | 0 | 3 |
| RNF38 | EMP2 | 0.765933 | 3 | 0 | 3 |
| RNF38 | XKR4 | 0.758563 | 5 | 0 | 5 |
| RNF38 | FNIP2 | 0.740992 | 3 | 0 | 3 |
| RNF38 | ANGPTL1 | 0.740733 | 6 | 0 | 6 |
| RNF38 | CLEC3B | 0.733669 | 3 | 0 | 3 |
| RNF38 | C1QTNF7 | 0.73353 | 5 | 0 | 5 |
| RNF38 | MRVI1 | 0.729975 | 6 | 0 | 6 |
| RNF38 | NEGR1 | 0.727709 | 6 | 0 | 6 |
| RNF38 | NFIA | 0.722555 | 7 | 0 | 7 |
| RNF38 | C3orf70 | 0.72122 | 5 | 0 | 4 |
| RNF38 | SYNPO2 | 0.719065 | 6 | 0 | 6 |
| RNF38 | MYOCD | 0.715557 | 6 | 0 | 5 |
| RNF38 | CYP21A2 | 0.712684 | 3 | 0 | 3 |
| RNF38 | MBNL1-AS1 | 0.712683 | 3 | 0 | 3 |
| RNF38 | PTCHD1 | 0.709011 | 5 | 0 | 4 |
| RNF38 | ITGA9 | 0.708804 | 6 | 0 | 5 |
| RNF38 | SLMAP | 0.707561 | 8 | 0 | 7 |
| RNF38 | BRWD3 | 0.707538 | 3 | 0 | 3 |
| RNF38 | LMO3 | 0.706594 | 6 | 0 | 6 |
For details and further investigation, click here
