| Full name: small integral membrane protein 4 | Alias Symbol: | ||
| Type: protein-coding gene | Cytoband: 3p21.1 | ||
| Entrez ID: 440957 | HGNC ID: HGNC:37257 | Ensembl Gene: ENSG00000168273 | OMIM ID: |
Expression of SMIM4:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | SMIM4 | 440957 | 229826_at | -0.0653 | 0.8104 | |
| GSE26886 | SMIM4 | 440957 | 229826_at | 0.4266 | 0.0114 | |
| GSE45670 | SMIM4 | 440957 | 229826_at | -0.2316 | 0.0989 | |
| GSE53622 | SMIM4 | 440957 | 52612 | -0.7272 | 0.0000 | |
| GSE53624 | SMIM4 | 440957 | 52612 | -0.5133 | 0.0000 | |
| GSE63941 | SMIM4 | 440957 | 229826_at | -0.8374 | 0.1357 | |
| GSE77861 | SMIM4 | 440957 | 238207_at | -0.1558 | 0.2067 | |
| SRP007169 | SMIM4 | 440957 | RNAseq | 0.4146 | 0.5446 | |
| SRP064894 | SMIM4 | 440957 | RNAseq | 0.2893 | 0.4868 | |
| SRP133303 | SMIM4 | 440957 | RNAseq | -0.2045 | 0.2743 | |
| SRP159526 | SMIM4 | 440957 | RNAseq | 0.2066 | 0.4824 | |
| SRP193095 | SMIM4 | 440957 | RNAseq | -0.7810 | 0.0000 | |
| SRP219564 | SMIM4 | 440957 | RNAseq | -0.6888 | 0.0753 |
Upregulated datasets: 0; Downregulated datasets: 0.
Survival by SMIM4 expression:
 |  |
| GSE53622 | GSE53624 |
Note: Click image to view full size file.
Copy number change of SMIM4:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | SMIM4 | 440957 | 0 | 18 | 12 | |
| GSE20123 | SMIM4 | 440957 | 0 | 19 | 11 | |
| GSE43470 | SMIM4 | 440957 | 0 | 18 | 25 | |
| GSE46452 | SMIM4 | 440957 | 2 | 17 | 40 | |
| GSE47630 | SMIM4 | 440957 | 1 | 24 | 15 | |
| GSE54993 | SMIM4 | 440957 | 6 | 2 | 62 | |
| GSE54994 | SMIM4 | 440957 | 0 | 33 | 20 | |
| GSE60625 | SMIM4 | 440957 | 5 | 0 | 6 | |
| GSE74703 | SMIM4 | 440957 | 0 | 14 | 22 | |
| GSE74704 | SMIM4 | 440957 | 0 | 12 | 8 | |
| TCGA | SMIM4 | 440957 | 0 | 78 | 18 |
Total number of gains: 14; Total number of losses: 235; Total Number of normals: 239.
Somatic mutations of SMIM4:
Generating mutation plots.
Highly correlated genes for SMIM4:
Showing top 20/56 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| SMIM4 | TEX264 | 0.69019 | 3 | 0 | 3 |
| SMIM4 | CCDC12 | 0.651595 | 3 | 0 | 3 |
| SMIM4 | HABP4 | 0.622955 | 3 | 0 | 3 |
| SMIM4 | SHISA4 | 0.610317 | 4 | 0 | 3 |
| SMIM4 | BOK | 0.608216 | 3 | 0 | 3 |
| SMIM4 | GSTK1 | 0.604591 | 3 | 0 | 3 |
| SMIM4 | ANO10 | 0.602367 | 4 | 0 | 3 |
| SMIM4 | PTDSS2 | 0.601463 | 4 | 0 | 4 |
| SMIM4 | SYNE1 | 0.601309 | 3 | 0 | 3 |
| SMIM4 | AOX1 | 0.600382 | 3 | 0 | 3 |
| SMIM4 | PLCD1 | 0.598133 | 3 | 0 | 3 |
| SMIM4 | ZER1 | 0.598128 | 3 | 0 | 3 |
| SMIM4 | TNS1 | 0.597756 | 4 | 0 | 3 |
| SMIM4 | PGLS | 0.592264 | 3 | 0 | 3 |
| SMIM4 | MEF2C-AS1 | 0.583264 | 3 | 0 | 3 |
| SMIM4 | EMD | 0.581496 | 5 | 0 | 3 |
| SMIM4 | PRAMEF10 | 0.574024 | 4 | 0 | 3 |
| SMIM4 | CRYL1 | 0.570521 | 3 | 0 | 3 |
| SMIM4 | RABGEF1 | 0.570245 | 3 | 0 | 3 |
| SMIM4 | NDUFAF3 | 0.568834 | 6 | 0 | 4 |
For details and further investigation, click here
