SND1

 

Full name: staphylococcal nuclease and tudor domain containing 1 Alias Symbol: TDRD11|p100
Type: protein-coding gene Cytoband: 7q32.1
Entrez ID: 27044 HGNC ID: HGNC:30646 Ensembl Gene: ENSG00000197157 OMIM ID: 602181
Drug and gene relationship at DGIdb

 

Expression of SND1:

 

Dataset Gene EntrezID Probe Log2FC Adj.pValue Expression
GSE17351 SND1 27044 201622_at 0.2640 0.4893
GSE20347 SND1 27044 201622_at 0.0916 0.3885
GSE23400 SND1 27044 201622_at 0.1289 0.0136
GSE26886 SND1 27044 201622_at 0.0823 0.5654
GSE29001 SND1 27044 201622_at 0.0290 0.9312
GSE38129 SND1 27044 201622_at 0.2222 0.0134
GSE45670 SND1 27044 201622_at 0.1076 0.4240
GSE53622 SND1 27044 38566 0.0447 0.4783
GSE53624 SND1 27044 38566 0.2077 0.0000
GSE63941 SND1 27044 201622_at -0.2360 0.4503
GSE77861 SND1 27044 201622_at 0.1762 0.2224
GSE97050 SND1 27044 A_23_P42829 0.3284 0.2333
SRP007169 SND1 27044 RNAseq -0.1296 0.7285
SRP008496 SND1 27044 RNAseq 0.0983 0.6999
SRP064894 SND1 27044 RNAseq 0.3756 0.0037
SRP133303 SND1 27044 RNAseq 0.3221 0.0274
SRP159526 SND1 27044 RNAseq -0.1349 0.4270
SRP193095 SND1 27044 RNAseq 0.0615 0.5310
SRP219564 SND1 27044 RNAseq 0.2877 0.2410
TCGA SND1 27044 RNAseq -0.0925 0.0416

Upregulated datasets: 0; Downregulated datasets: 0.  


 

Survival by SND1 expression:

 

GSE53622GSE53624TCGA

 

Note: Click image to view full size file.  


Copy number change of SND1:

 

Dataset Gene EntrezID Gain Loss Normal Detail
GSE15526 SND1 27044 7 1 22
GSE20123 SND1 27044 7 2 21
GSE43470 SND1 27044 2 3 38
GSE46452 SND1 27044 7 2 50
GSE47630 SND1 27044 7 4 29
GSE54993 SND1 27044 3 5 62
GSE54994 SND1 27044 9 7 37
GSE60625 SND1 27044 0 0 11
GSE74703 SND1 27044 2 3 31
GSE74704 SND1 27044 3 2 15
TCGA SND1 27044 30 23 43

Total number of gains: 77; Total number of losses: 52; Total Number of normals: 359.  


 

Somatic mutations of SND1:

 

Generating mutation plots.

 

Highly correlated genes for SND1:

 

Showing top 20/495 corelated genes with mean PCC>0.5.
Gene1 Gene2 Mean PCC Num. Datasets Num. PCC<0 Num. PCC>0.5
SND1LDLRAP10.8355303
SND1MPHOSPH90.792298303
SND1HIC20.780685303
SND1GLE10.775407303
SND1RSBN1L0.774708303
SND1ELOF10.766938404
SND1CLEC12A0.766795303
SND1KLHDC30.762475303
SND1SMAD10.752275303
SND1NFKBIL10.738686303
SND1SLC30A70.738493303
SND1KRTCAP20.738088303
SND1KCTD100.738065303
SND1PALB20.733488303
SND1UBE2J20.731646303
SND1DDX210.729018303
SND1PEX100.728185303
SND1SNAPC20.720259303
SND1APH1B0.718076303
SND1RUNDC10.716137303

For details and further investigation, click here