| Full name: SOX21 antisense divergent transcript 1 | Alias Symbol: | ||
| Type: non-coding RNA | Cytoband: 13q32.1 | ||
| Entrez ID: 100507533 | HGNC ID: HGNC:39807 | Ensembl Gene: ENSG00000227640 | OMIM ID: |
Expression of SOX21-AS1:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | SOX21-AS1 | 100507533 | 237885_at | -1.1877 | 0.3965 | |
| GSE26886 | SOX21-AS1 | 100507533 | 237885_at | -1.6139 | 0.0000 | |
| GSE45670 | SOX21-AS1 | 100507533 | 237885_at | -0.2479 | 0.4493 | |
| GSE53622 | SOX21-AS1 | 100507533 | 15678 | -1.3897 | 0.0000 | |
| GSE53624 | SOX21-AS1 | 100507533 | 15678 | -1.4909 | 0.0000 | |
| GSE63941 | SOX21-AS1 | 100507533 | 237885_at | 2.3511 | 0.1093 | |
| GSE77861 | SOX21-AS1 | 100507533 | 237885_at | -0.4977 | 0.0295 | |
| SRP007169 | SOX21-AS1 | 100507533 | RNAseq | -1.6709 | 0.0001 | |
| SRP008496 | SOX21-AS1 | 100507533 | RNAseq | -1.2938 | 0.0001 | |
| SRP064894 | SOX21-AS1 | 100507533 | RNAseq | -1.5279 | 0.0084 | |
| SRP133303 | SOX21-AS1 | 100507533 | RNAseq | -0.6173 | 0.3051 | |
| SRP159526 | SOX21-AS1 | 100507533 | RNAseq | -0.7041 | 0.0919 | |
| SRP193095 | SOX21-AS1 | 100507533 | RNAseq | -1.9128 | 0.0000 | |
| SRP219564 | SOX21-AS1 | 100507533 | RNAseq | -1.6005 | 0.1349 |
Upregulated datasets: 0; Downregulated datasets: 7.
Survival by SOX21-AS1 expression:
 |  |
| GSE53622 | GSE53624 |
Note: Click image to view full size file.
Copy number change of SOX21-AS1:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | SOX21-AS1 | 100507533 | 4 | 9 | 17 | |
| GSE20123 | SOX21-AS1 | 100507533 | 4 | 8 | 18 | |
| GSE43470 | SOX21-AS1 | 100507533 | 2 | 12 | 29 | |
| GSE46452 | SOX21-AS1 | 100507533 | 0 | 32 | 27 | |
| GSE47630 | SOX21-AS1 | 100507533 | 3 | 27 | 10 | |
| GSE54993 | SOX21-AS1 | 100507533 | 11 | 3 | 56 | |
| GSE54994 | SOX21-AS1 | 100507533 | 3 | 14 | 36 | |
| GSE60625 | SOX21-AS1 | 100507533 | 0 | 3 | 8 | |
| GSE74703 | SOX21-AS1 | 100507533 | 2 | 10 | 24 | |
| GSE74704 | SOX21-AS1 | 100507533 | 2 | 8 | 10 |
Total number of gains: 31; Total number of losses: 126; Total Number of normals: 235.
Somatic mutations of SOX21-AS1:
Generating mutation plots.
Highly correlated genes for SOX21-AS1:
Showing top 20/710 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| SOX21-AS1 | CEACAM1 | 0.758622 | 4 | 0 | 4 |
| SOX21-AS1 | TNKS2 | 0.756431 | 3 | 0 | 3 |
| SOX21-AS1 | EPS15 | 0.746377 | 3 | 0 | 3 |
| SOX21-AS1 | CEACAM6 | 0.74386 | 5 | 0 | 5 |
| SOX21-AS1 | TMPRSS2 | 0.742987 | 5 | 0 | 5 |
| SOX21-AS1 | MUC20 | 0.738251 | 6 | 0 | 6 |
| SOX21-AS1 | FAM3B | 0.737198 | 6 | 0 | 5 |
| SOX21-AS1 | GCHFR | 0.735308 | 4 | 0 | 4 |
| SOX21-AS1 | ATP13A4 | 0.725901 | 6 | 0 | 6 |
| SOX21-AS1 | LIPH | 0.706815 | 6 | 0 | 6 |
| SOX21-AS1 | NFE2L2 | 0.702504 | 4 | 0 | 4 |
| SOX21-AS1 | TMEM144 | 0.700461 | 3 | 0 | 3 |
| SOX21-AS1 | TPRG1 | 0.695629 | 7 | 0 | 7 |
| SOX21-AS1 | SHOC2 | 0.695395 | 3 | 0 | 3 |
| SOX21-AS1 | CYP2C18 | 0.694641 | 6 | 0 | 6 |
| SOX21-AS1 | TSPAN6 | 0.694431 | 6 | 0 | 6 |
| SOX21-AS1 | TMEM254 | 0.694336 | 5 | 0 | 5 |
| SOX21-AS1 | ERMP1 | 0.692214 | 6 | 0 | 6 |
| SOX21-AS1 | ADH7 | 0.69217 | 7 | 0 | 7 |
| SOX21-AS1 | ZNF518A | 0.690988 | 3 | 0 | 3 |
For details and further investigation, click here
