| Full name: tripartite motif containing 56 | Alias Symbol: RNF109 | ||
| Type: protein-coding gene | Cytoband: 7q22.1 | ||
| Entrez ID: 81844 | HGNC ID: HGNC:19028 | Ensembl Gene: ENSG00000169871 | OMIM ID: 616996 |
| Drug and gene relationship at DGIdb | |||
Expression of TRIM56:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | TRIM56 | 81844 | 231876_at | 0.1548 | 0.7864 | |
| GSE26886 | TRIM56 | 81844 | 231876_at | -0.3304 | 0.2719 | |
| GSE45670 | TRIM56 | 81844 | 231876_at | 0.0071 | 0.9784 | |
| GSE53622 | TRIM56 | 81844 | 98986 | -0.0997 | 0.3436 | |
| GSE53624 | TRIM56 | 81844 | 98986 | -0.4056 | 0.0000 | |
| GSE63941 | TRIM56 | 81844 | 231876_at | -1.1735 | 0.0253 | |
| GSE77861 | TRIM56 | 81844 | 231876_at | -0.2575 | 0.2289 | |
| GSE97050 | TRIM56 | 81844 | A_23_P350107 | -0.5177 | 0.1782 | |
| SRP007169 | TRIM56 | 81844 | RNAseq | -0.1762 | 0.6806 | |
| SRP008496 | TRIM56 | 81844 | RNAseq | -0.3887 | 0.0916 | |
| SRP064894 | TRIM56 | 81844 | RNAseq | -0.4342 | 0.0381 | |
| SRP133303 | TRIM56 | 81844 | RNAseq | -0.2047 | 0.0918 | |
| SRP159526 | TRIM56 | 81844 | RNAseq | -0.4677 | 0.1234 | |
| SRP193095 | TRIM56 | 81844 | RNAseq | 0.0941 | 0.5012 | |
| SRP219564 | TRIM56 | 81844 | RNAseq | 0.1545 | 0.6787 | |
| TCGA | TRIM56 | 81844 | RNAseq | -0.0587 | 0.3197 |
Upregulated datasets: 0; Downregulated datasets: 1.
Survival by TRIM56 expression:
 |  |  |
| GSE53622 | GSE53624 | TCGA |
Note: Click image to view full size file.
Copy number change of TRIM56:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | TRIM56 | 81844 | 13 | 0 | 17 | |
| GSE20123 | TRIM56 | 81844 | 13 | 0 | 17 | |
| GSE43470 | TRIM56 | 81844 | 7 | 2 | 34 | |
| GSE46452 | TRIM56 | 81844 | 11 | 1 | 47 | |
| GSE47630 | TRIM56 | 81844 | 7 | 3 | 30 | |
| GSE54993 | TRIM56 | 81844 | 1 | 10 | 59 | |
| GSE54994 | TRIM56 | 81844 | 15 | 3 | 35 | |
| GSE60625 | TRIM56 | 81844 | 0 | 0 | 11 | |
| GSE74703 | TRIM56 | 81844 | 7 | 1 | 28 | |
| GSE74704 | TRIM56 | 81844 | 9 | 0 | 11 | |
| TCGA | TRIM56 | 81844 | 53 | 6 | 37 |
Total number of gains: 136; Total number of losses: 26; Total Number of normals: 326.
Somatic mutations of TRIM56:
Generating mutation plots.
Highly correlated genes for TRIM56:
Showing top 20/131 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| TRIM56 | LUC7L3 | 0.784718 | 3 | 0 | 3 |
| TRIM56 | TTC17 | 0.773781 | 3 | 0 | 3 |
| TRIM56 | ZNF557 | 0.767409 | 3 | 0 | 3 |
| TRIM56 | CYTH2 | 0.745544 | 3 | 0 | 3 |
| TRIM56 | AKAP17A | 0.738695 | 3 | 0 | 3 |
| TRIM56 | GPR107 | 0.72952 | 3 | 0 | 3 |
| TRIM56 | SLC35B3 | 0.718909 | 3 | 0 | 3 |
| TRIM56 | GAS6 | 0.718329 | 3 | 0 | 3 |
| TRIM56 | MED23 | 0.711125 | 4 | 0 | 3 |
| TRIM56 | ZDHHC14 | 0.70529 | 3 | 0 | 3 |
| TRIM56 | PCMTD1 | 0.705119 | 3 | 0 | 3 |
| TRIM56 | MOSPD2 | 0.704293 | 3 | 0 | 3 |
| TRIM56 | GTF2H5 | 0.703761 | 3 | 0 | 3 |
| TRIM56 | ZFP3 | 0.702397 | 3 | 0 | 3 |
| TRIM56 | WDTC1 | 0.700742 | 4 | 0 | 4 |
| TRIM56 | ANKHD1 | 0.696398 | 4 | 0 | 4 |
| TRIM56 | DYNLT1 | 0.692419 | 3 | 0 | 3 |
| TRIM56 | TMEM181 | 0.690668 | 3 | 0 | 3 |
| TRIM56 | ENSA | 0.688236 | 3 | 0 | 3 |
| TRIM56 | GNL3 | 0.683719 | 3 | 0 | 3 |
For details and further investigation, click here
