| Full name: AGPAT4 intronic transcript 1 | Alias Symbol: FLJ23112 | ||
| Type: non-coding RNA | Cytoband: 6q26 | ||
| Entrez ID: 79992 | HGNC ID: HGNC:20988 | Ensembl Gene: ENSG00000279355 | OMIM ID: |
| Drug and gene relationship at DGIdb | |||
Expression of AGPAT4-IT1:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | AGPAT4-IT1 | 79992 | 223740_at | 0.3227 | 0.5445 | |
| GSE26886 | AGPAT4-IT1 | 79992 | 223740_at | 0.0252 | 0.8708 | |
| GSE45670 | AGPAT4-IT1 | 79992 | 223740_at | 0.6957 | 0.0007 | |
| GSE53622 | AGPAT4-IT1 | 79992 | 19886 | 0.1420 | 0.1777 | |
| GSE53624 | AGPAT4-IT1 | 79992 | 19886 | 0.1823 | 0.0323 | |
| GSE63941 | AGPAT4-IT1 | 79992 | 223740_at | -0.5694 | 0.0101 | |
| GSE77861 | AGPAT4-IT1 | 79992 | 223740_at | 0.0488 | 0.6432 | |
| SRP133303 | AGPAT4-IT1 | 79992 | RNAseq | 0.7228 | 0.0210 | |
| SRP219564 | AGPAT4-IT1 | 79992 | RNAseq | -0.1639 | 0.7408 |
Upregulated datasets: 0; Downregulated datasets: 0.
Survival by AGPAT4-IT1 expression:
 |  |
| GSE53622 | GSE53624 |
Note: Click image to view full size file.
Copy number change of AGPAT4-IT1:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | AGPAT4-IT1 | 79992 | 1 | 5 | 24 | |
| GSE20123 | AGPAT4-IT1 | 79992 | 1 | 4 | 25 | |
| GSE43470 | AGPAT4-IT1 | 79992 | 3 | 0 | 40 | |
| GSE46452 | AGPAT4-IT1 | 79992 | 3 | 10 | 46 | |
| GSE47630 | AGPAT4-IT1 | 79992 | 9 | 4 | 27 | |
| GSE54993 | AGPAT4-IT1 | 79992 | 4 | 4 | 62 | |
| GSE54994 | AGPAT4-IT1 | 79992 | 8 | 9 | 36 | |
| GSE60625 | AGPAT4-IT1 | 79992 | 0 | 1 | 10 | |
| GSE74703 | AGPAT4-IT1 | 79992 | 3 | 0 | 33 | |
| GSE74704 | AGPAT4-IT1 | 79992 | 0 | 2 | 18 |
Total number of gains: 32; Total number of losses: 39; Total Number of normals: 321.
Somatic mutations of AGPAT4-IT1:
Generating mutation plots.
Highly correlated genes for AGPAT4-IT1:
Showing top 20/26 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| AGPAT4-IT1 | DCBLD1 | 0.668109 | 3 | 0 | 3 |
| AGPAT4-IT1 | SLC15A4 | 0.62878 | 3 | 0 | 3 |
| AGPAT4-IT1 | RABGGTB | 0.627693 | 3 | 0 | 3 |
| AGPAT4-IT1 | SPRY4-IT1 | 0.624651 | 3 | 0 | 3 |
| AGPAT4-IT1 | LYAR | 0.624614 | 3 | 0 | 3 |
| AGPAT4-IT1 | SPDL1 | 0.619867 | 3 | 0 | 3 |
| AGPAT4-IT1 | TMSB10 | 0.616619 | 3 | 0 | 3 |
| AGPAT4-IT1 | RDH11 | 0.594638 | 3 | 0 | 3 |
| AGPAT4-IT1 | ANXA5 | 0.588736 | 3 | 0 | 3 |
| AGPAT4-IT1 | LLGL1 | 0.585743 | 3 | 0 | 3 |
| AGPAT4-IT1 | TNFRSF10D | 0.580101 | 4 | 0 | 3 |
| AGPAT4-IT1 | MAP7D1 | 0.5785 | 5 | 0 | 5 |
| AGPAT4-IT1 | AGPAT4 | 0.577224 | 6 | 0 | 4 |
| AGPAT4-IT1 | GTPBP4 | 0.567023 | 3 | 0 | 3 |
| AGPAT4-IT1 | ASAP1-IT1 | 0.564009 | 3 | 0 | 3 |
| AGPAT4-IT1 | ASB1 | 0.545396 | 3 | 0 | 3 |
| AGPAT4-IT1 | CENPE | 0.544647 | 3 | 0 | 3 |
| AGPAT4-IT1 | TMEM45A | 0.541193 | 3 | 0 | 3 |
| AGPAT4-IT1 | GPR68 | 0.540331 | 5 | 0 | 3 |
| AGPAT4-IT1 | ARFGAP1 | 0.539091 | 5 | 0 | 3 |
For details and further investigation, click here
