| Full name: apolipoprotein B mRNA editing enzyme catalytic subunit 3F | Alias Symbol: ARP8|BK150C2.4.MRNA|KA6 | ||
| Type: protein-coding gene | Cytoband: 22q13.1 | ||
| Entrez ID: 200316 | HGNC ID: HGNC:17356 | Ensembl Gene: ENSG00000128394 | OMIM ID: 608993 |
| Drug and gene relationship at DGIdb | |||
Expression of APOBEC3F:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | APOBEC3F | 200316 | 243912_x_at | 0.1710 | 0.4659 | |
| GSE20347 | APOBEC3F | 200316 | 214994_at | 0.0294 | 0.7156 | |
| GSE23400 | APOBEC3F | 200316 | 214994_at | -0.0805 | 0.0093 | |
| GSE26886 | APOBEC3F | 200316 | 243912_x_at | 0.0602 | 0.6720 | |
| GSE29001 | APOBEC3F | 200316 | 214994_at | 0.2307 | 0.2774 | |
| GSE38129 | APOBEC3F | 200316 | 214994_at | -0.0249 | 0.7455 | |
| GSE45670 | APOBEC3F | 200316 | 243912_x_at | 0.1459 | 0.0346 | |
| GSE53622 | APOBEC3F | 200316 | 127246 | 0.4294 | 0.0000 | |
| GSE53624 | APOBEC3F | 200316 | 127246 | 0.2752 | 0.0018 | |
| GSE63941 | APOBEC3F | 200316 | 243912_x_at | 0.1355 | 0.3407 | |
| GSE77861 | APOBEC3F | 200316 | 243912_x_at | -0.0186 | 0.8599 | |
| GSE97050 | APOBEC3F | 200316 | A_23_P357101 | 0.2238 | 0.4895 | |
| SRP007169 | APOBEC3F | 200316 | RNAseq | 0.1284 | 0.8515 | |
| SRP008496 | APOBEC3F | 200316 | RNAseq | -0.2181 | 0.7070 | |
| SRP064894 | APOBEC3F | 200316 | RNAseq | 0.5168 | 0.0744 | |
| SRP133303 | APOBEC3F | 200316 | RNAseq | 0.1940 | 0.3501 | |
| SRP159526 | APOBEC3F | 200316 | RNAseq | 0.2865 | 0.5004 | |
| SRP193095 | APOBEC3F | 200316 | RNAseq | 0.3935 | 0.0026 | |
| SRP219564 | APOBEC3F | 200316 | RNAseq | 0.5305 | 0.3336 | |
| TCGA | APOBEC3F | 200316 | RNAseq | 0.5151 | 0.0002 |
Upregulated datasets: 0; Downregulated datasets: 0.
Survival by APOBEC3F expression:
 |  |  |
| GSE53622 | GSE53624 | TCGA |
Note: Click image to view full size file.
Copy number change of APOBEC3F:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | APOBEC3F | 200316 | 6 | 5 | 19 | |
| GSE20123 | APOBEC3F | 200316 | 6 | 4 | 20 | |
| GSE43470 | APOBEC3F | 200316 | 5 | 5 | 33 | |
| GSE46452 | APOBEC3F | 200316 | 32 | 2 | 25 | |
| GSE47630 | APOBEC3F | 200316 | 9 | 4 | 27 | |
| GSE54993 | APOBEC3F | 200316 | 3 | 6 | 61 | |
| GSE54994 | APOBEC3F | 200316 | 9 | 7 | 37 | |
| GSE60625 | APOBEC3F | 200316 | 5 | 0 | 6 | |
| GSE74703 | APOBEC3F | 200316 | 5 | 4 | 27 | |
| GSE74704 | APOBEC3F | 200316 | 3 | 2 | 15 | |
| TCGA | APOBEC3F | 200316 | 27 | 15 | 54 |
Total number of gains: 110; Total number of losses: 54; Total Number of normals: 324.
Somatic mutations of APOBEC3F:
Generating mutation plots.
Highly correlated genes for APOBEC3F:
Showing top 20/110 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| APOBEC3F | APOBEC3C | 0.872585 | 4 | 0 | 4 |
| APOBEC3F | NENF | 0.693994 | 3 | 0 | 3 |
| APOBEC3F | WDYHV1 | 0.679795 | 3 | 0 | 3 |
| APOBEC3F | RBP5 | 0.678778 | 3 | 0 | 3 |
| APOBEC3F | NRGN | 0.677109 | 3 | 0 | 3 |
| APOBEC3F | CDC25A | 0.670455 | 3 | 0 | 3 |
| APOBEC3F | RARA | 0.669145 | 5 | 0 | 4 |
| APOBEC3F | GAL | 0.66536 | 3 | 0 | 3 |
| APOBEC3F | APOBEC3H | 0.657029 | 3 | 0 | 3 |
| APOBEC3F | APOBEC3G | 0.652485 | 5 | 0 | 5 |
| APOBEC3F | MYADML2 | 0.642377 | 4 | 0 | 3 |
| APOBEC3F | GMPS | 0.639866 | 4 | 0 | 3 |
| APOBEC3F | GAA | 0.638626 | 3 | 0 | 3 |
| APOBEC3F | MAST2 | 0.637985 | 3 | 0 | 3 |
| APOBEC3F | JOSD2 | 0.635173 | 4 | 0 | 3 |
| APOBEC3F | SEMA4C | 0.630014 | 4 | 0 | 3 |
| APOBEC3F | SNX29 | 0.62395 | 3 | 0 | 3 |
| APOBEC3F | LMF2 | 0.622852 | 4 | 0 | 3 |
| APOBEC3F | OR2F1 | 0.622278 | 3 | 0 | 3 |
| APOBEC3F | PIK3AP1 | 0.619882 | 3 | 0 | 3 |
For details and further investigation, click here
