| Full name: sorting nexin 29 | Alias Symbol: FLJ12363 | ||
| Type: protein-coding gene | Cytoband: 16p13.13-p13.12 | ||
| Entrez ID: 92017 | HGNC ID: HGNC:30542 | Ensembl Gene: ENSG00000048471 | OMIM ID: |
| Drug and gene relationship at DGIdb | |||
Expression of SNX29:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | SNX29 | 92017 | 232485_at | 0.0102 | 0.9847 | |
| GSE26886 | SNX29 | 92017 | 232485_at | 0.1588 | 0.2666 | |
| GSE45670 | SNX29 | 92017 | 232485_at | -0.0481 | 0.7542 | |
| GSE53622 | SNX29 | 92017 | 121826 | -0.3837 | 0.0001 | |
| GSE53624 | SNX29 | 92017 | 121826 | -0.3093 | 0.0006 | |
| GSE63941 | SNX29 | 92017 | 232485_at | -0.2298 | 0.2045 | |
| GSE77861 | SNX29 | 92017 | 232485_at | 0.0078 | 0.9633 | |
| GSE97050 | SNX29 | 92017 | A_32_P107002 | 0.4055 | 0.2666 | |
| SRP007169 | SNX29 | 92017 | RNAseq | -0.1405 | 0.7488 | |
| SRP008496 | SNX29 | 92017 | RNAseq | -0.2010 | 0.5663 | |
| SRP064894 | SNX29 | 92017 | RNAseq | -0.4905 | 0.0321 | |
| SRP133303 | SNX29 | 92017 | RNAseq | -0.2129 | 0.1387 | |
| SRP159526 | SNX29 | 92017 | RNAseq | -0.9222 | 0.0143 | |
| SRP193095 | SNX29 | 92017 | RNAseq | 0.0002 | 0.9986 | |
| SRP219564 | SNX29 | 92017 | RNAseq | -0.3555 | 0.2752 | |
| TCGA | SNX29 | 92017 | RNAseq | -0.0956 | 0.1379 |
Upregulated datasets: 0; Downregulated datasets: 0.
Survival by SNX29 expression:
 |  |  |
| GSE53622 | GSE53624 | TCGA |
Note: Click image to view full size file.
Copy number change of SNX29:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | SNX29 | 92017 | 4 | 4 | 22 | |
| GSE20123 | SNX29 | 92017 | 4 | 3 | 23 | |
| GSE43470 | SNX29 | 92017 | 3 | 3 | 37 | |
| GSE46452 | SNX29 | 92017 | 38 | 1 | 20 | |
| GSE47630 | SNX29 | 92017 | 14 | 6 | 20 | |
| GSE54993 | SNX29 | 92017 | 3 | 5 | 62 | |
| GSE54994 | SNX29 | 92017 | 5 | 9 | 39 | |
| GSE60625 | SNX29 | 92017 | 4 | 0 | 7 | |
| GSE74703 | SNX29 | 92017 | 3 | 2 | 31 | |
| GSE74704 | SNX29 | 92017 | 2 | 1 | 17 | |
| TCGA | SNX29 | 92017 | 22 | 12 | 62 |
Total number of gains: 102; Total number of losses: 46; Total Number of normals: 340.
Somatic mutations of SNX29:
Generating mutation plots.
Highly correlated genes for SNX29:
Showing top 20/66 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| SNX29 | ADAMTS14 | 0.698032 | 3 | 0 | 3 |
| SNX29 | SNORD8 | 0.688541 | 3 | 0 | 3 |
| SNX29 | SSH2 | 0.688304 | 3 | 0 | 3 |
| SNX29 | SIT1 | 0.684351 | 3 | 0 | 3 |
| SNX29 | GAS2L1 | 0.68034 | 3 | 0 | 3 |
| SNX29 | MICALCL | 0.665251 | 4 | 0 | 3 |
| SNX29 | WDFY3 | 0.657142 | 4 | 0 | 4 |
| SNX29 | OXCT2 | 0.641715 | 3 | 0 | 3 |
| SNX29 | FANCA | 0.639494 | 3 | 0 | 3 |
| SNX29 | FKBP2 | 0.639437 | 4 | 0 | 3 |
| SNX29 | OPLAH | 0.639198 | 3 | 0 | 3 |
| SNX29 | CIAO1 | 0.638298 | 3 | 0 | 3 |
| SNX29 | CLEC16A | 0.63618 | 3 | 0 | 3 |
| SNX29 | TMSB10 | 0.635608 | 3 | 0 | 3 |
| SNX29 | ROBO1 | 0.630624 | 3 | 0 | 3 |
| SNX29 | APOBEC3F | 0.62395 | 3 | 0 | 3 |
| SNX29 | ITCH | 0.623822 | 4 | 0 | 4 |
| SNX29 | CRYGD | 0.62069 | 3 | 0 | 3 |
| SNX29 | ACBD3 | 0.610289 | 4 | 0 | 3 |
| SNX29 | TNFRSF1A | 0.607641 | 3 | 0 | 3 |
For details and further investigation, click here
