ATRX

 

Full name: ATRX chromatin remodeler Alias Symbol: XH2|XNP
Type: protein-coding gene Cytoband: Xq21.1
Entrez ID: 546 HGNC ID: HGNC:886 Ensembl Gene: ENSG00000085224 OMIM ID: 300032
Drug and gene relationship at DGIdb
Screen Evidence:
  • Knocking out of this gene by CRIPR/Cas9 screen found 9/325 cell lines had fitness change in Project Score.
  • This gene has been idenfitied as a common driver in this paper.
  • Knocking out of this gene by CRIPR/Cas9 screen found altered tolerance on DNA toxicity in Genotoxic Screens.

 

Expression of ATRX:

 

Dataset Gene EntrezID Probe Log2FC Adj.pValue Expression
GSE17351 ATRX 546 208861_s_at -0.2068 0.5391
GSE20347 ATRX 546 208861_s_at 0.1094 0.6109
GSE23400 ATRX 546 208861_s_at 0.1729 0.0494
GSE26886 ATRX 546 208861_s_at 0.3794 0.0872
GSE29001 ATRX 546 208861_s_at 0.2120 0.3336
GSE38129 ATRX 546 208861_s_at -0.0504 0.7656
GSE45670 ATRX 546 208859_s_at 0.3245 0.1723
GSE53622 ATRX 546 12402 -0.1931 0.0028
GSE53624 ATRX 546 12402 -0.0725 0.1449
GSE63941 ATRX 546 208861_s_at -1.6799 0.0080
GSE77861 ATRX 546 208861_s_at 0.3636 0.2319
GSE97050 ATRX 546 A_33_P3319943 -0.5445 0.1239
SRP007169 ATRX 546 RNAseq 0.7906 0.0674
SRP008496 ATRX 546 RNAseq 1.0228 0.0012
SRP064894 ATRX 546 RNAseq -0.0853 0.6868
SRP133303 ATRX 546 RNAseq 0.2431 0.1160
SRP159526 ATRX 546 RNAseq -0.1250 0.4732
SRP193095 ATRX 546 RNAseq 0.1351 0.1784
SRP219564 ATRX 546 RNAseq -0.1412 0.7022
TCGA ATRX 546 RNAseq -0.1751 0.0001

Upregulated datasets: 1; Downregulated datasets: 1.  


 

Survival by ATRX expression:

 

GSE53622GSE53624TCGA

 

Note: Click image to view full size file.  


Copy number change of ATRX:

 

No record found for this gene.


 

Somatic mutations of ATRX:

 

Generating mutation plots.

 

Highly correlated genes for ATRX:

 

Showing top 20/577 corelated genes with mean PCC>0.5.
Gene1 Gene2 Mean PCC Num. Datasets Num. PCC<0 Num. PCC>0.5
ATRXCNST0.760204303
ATRXZFAND50.718962303
ATRXLARP40.710977303
ATRXZNF2600.70797303
ATRXCOMMD60.706845403
ATRXPLIN40.705316303
ATRXFNIP20.70054303
ATRXPCMTD10.698149303
ATRXLSM14A0.695046303
ATRXCCDC1120.695042303
ATRXMRVI10.694805404
ATRXPNPLA80.692178303
ATRXC5orf240.685201404
ATRXC17orf800.67867303
ATRXPPIG0.675393403
ATRXDOCK70.675139403
ATRXTAOK10.671327404
ATRXRPAP20.667283303
ATRXCTSF0.667096403
ATRXFAM98B0.664623303

For details and further investigation, click here