| Full name: ATXN8 opposite strand lncRNA | Alias Symbol: NCRNA00003 | ||
| Type: non-coding RNA | Cytoband: 13q21.33 | ||
| Entrez ID: 6315 | HGNC ID: HGNC:10561 | Ensembl Gene: ENSG00000230223 | OMIM ID: 603680 |
| Drug and gene relationship at DGIdb | |||
Expression of ATXN8OS:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | ATXN8OS | 6315 | 216404_at | 0.0822 | 0.7417 | |
| GSE20347 | ATXN8OS | 6315 | 216404_at | 0.0257 | 0.7673 | |
| GSE23400 | ATXN8OS | 6315 | 216404_at | -0.0751 | 0.0340 | |
| GSE26886 | ATXN8OS | 6315 | 216404_at | 0.0735 | 0.4780 | |
| GSE29001 | ATXN8OS | 6315 | 216404_at | -0.0837 | 0.6851 | |
| GSE38129 | ATXN8OS | 6315 | 216404_at | -0.0300 | 0.7401 | |
| GSE45670 | ATXN8OS | 6315 | 216404_at | 0.2903 | 0.0012 | |
| GSE53622 | ATXN8OS | 6315 | 23062 | 0.0935 | 0.5823 | |
| GSE53624 | ATXN8OS | 6315 | 23062 | 0.4620 | 0.0000 | |
| GSE63941 | ATXN8OS | 6315 | 216404_at | 0.3231 | 0.0055 | |
| GSE77861 | ATXN8OS | 6315 | 216404_at | 0.0758 | 0.3742 | |
| SRP133303 | ATXN8OS | 6315 | RNAseq | 0.2805 | 0.4442 |
Upregulated datasets: 0; Downregulated datasets: 0.
Survival by ATXN8OS expression:
 |  |  |
| GSE53622 | GSE53624 | TCGA |
Note: Click image to view full size file.
Copy number change of ATXN8OS:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | ATXN8OS | 6315 | 3 | 12 | 15 | |
| GSE20123 | ATXN8OS | 6315 | 3 | 11 | 16 | |
| GSE43470 | ATXN8OS | 6315 | 3 | 12 | 28 | |
| GSE46452 | ATXN8OS | 6315 | 1 | 31 | 27 | |
| GSE47630 | ATXN8OS | 6315 | 3 | 26 | 11 | |
| GSE54993 | ATXN8OS | 6315 | 11 | 3 | 56 | |
| GSE54994 | ATXN8OS | 6315 | 4 | 12 | 37 | |
| GSE60625 | ATXN8OS | 6315 | 0 | 3 | 8 | |
| GSE74703 | ATXN8OS | 6315 | 2 | 10 | 24 | |
| GSE74704 | ATXN8OS | 6315 | 1 | 10 | 9 | |
| TCGA | ATXN8OS | 6315 | 12 | 33 | 51 |
Total number of gains: 43; Total number of losses: 163; Total Number of normals: 282.
Somatic mutations of ATXN8OS:
Generating mutation plots.
Highly correlated genes for ATXN8OS:
Showing top 20/796 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| ATXN8OS | IL2RG | 0.784642 | 3 | 0 | 3 |
| ATXN8OS | NOX1 | 0.733109 | 4 | 0 | 4 |
| ATXN8OS | NXPE4 | 0.714522 | 5 | 0 | 5 |
| ATXN8OS | NTNG1 | 0.713165 | 4 | 0 | 4 |
| ATXN8OS | IFNA4 | 0.710545 | 4 | 0 | 4 |
| ATXN8OS | KRTAP5-8 | 0.710289 | 4 | 0 | 4 |
| ATXN8OS | OR1F1 | 0.701137 | 4 | 0 | 4 |
| ATXN8OS | TRHR | 0.696796 | 4 | 0 | 4 |
| ATXN8OS | TNR | 0.691938 | 4 | 0 | 4 |
| ATXN8OS | IFNA7 | 0.69014 | 6 | 0 | 6 |
| ATXN8OS | DSCR4 | 0.688737 | 4 | 0 | 4 |
| ATXN8OS | ADM2 | 0.685872 | 4 | 0 | 4 |
| ATXN8OS | KCNJ10 | 0.68258 | 4 | 0 | 4 |
| ATXN8OS | TCL6 | 0.679853 | 4 | 0 | 4 |
| ATXN8OS | FZR1 | 0.679585 | 3 | 0 | 3 |
| ATXN8OS | MAS1 | 0.679129 | 4 | 0 | 4 |
| ATXN8OS | SOAT2 | 0.677522 | 5 | 0 | 5 |
| ATXN8OS | CAMKV | 0.677145 | 5 | 0 | 4 |
| ATXN8OS | LMAN1L | 0.672874 | 4 | 0 | 4 |
| ATXN8OS | SLC5A7 | 0.672388 | 4 | 0 | 4 |
For details and further investigation, click here
