CDH13

 

Full name: cadherin 13 Alias Symbol: CDHH
Type: protein-coding gene Cytoband: 16q23.3
Entrez ID: 1012 HGNC ID: HGNC:1753 Ensembl Gene: ENSG00000140945 OMIM ID: 601364
Drug and gene relationship at DGIdb

 

Expression of CDH13:

 

Dataset Gene EntrezID Probe Log2FC Adj.pValue Expression
GSE17351 CDH13 1012 204726_at 0.5061 0.6169
GSE20347 CDH13 1012 204726_at 0.6368 0.0086
GSE23400 CDH13 1012 204726_at 0.4480 0.0000
GSE26886 CDH13 1012 204726_at 0.7285 0.0841
GSE29001 CDH13 1012 204726_at 0.6314 0.1511
GSE38129 CDH13 1012 204726_at 0.6999 0.0015
GSE45670 CDH13 1012 204726_at 0.8350 0.0306
GSE53622 CDH13 1012 79528 1.0722 0.0000
GSE53624 CDH13 1012 79528 1.0884 0.0000
GSE63941 CDH13 1012 204726_at -1.4681 0.2258
GSE77861 CDH13 1012 204726_at 0.5491 0.1328
GSE97050 CDH13 1012 A_32_P85999 0.3238 0.2155
SRP007169 CDH13 1012 RNAseq 2.3223 0.0015
SRP008496 CDH13 1012 RNAseq 2.1059 0.0000
SRP064894 CDH13 1012 RNAseq 1.4250 0.0000
SRP133303 CDH13 1012 RNAseq 0.9619 0.0001
SRP159526 CDH13 1012 RNAseq 2.1253 0.0000
SRP193095 CDH13 1012 RNAseq 2.2647 0.0000
SRP219564 CDH13 1012 RNAseq -0.1436 0.7700
TCGA CDH13 1012 RNAseq 0.7542 0.0000

Upregulated datasets: 7; Downregulated datasets: 0.  

 

Survival by CDH13 expression:

 

GSE53622GSE53624TCGA

 

Note: Click image to view full size file.  

Copy number change of CDH13:

 

Dataset Gene EntrezID Gain Loss Normal Detail
GSE15526 CDH13 1012 5 4 21
GSE20123 CDH13 1012 5 4 21
GSE43470 CDH13 1012 2 10 31
GSE46452 CDH13 1012 37 2 20
GSE47630 CDH13 1012 11 9 20
GSE54993 CDH13 1012 3 4 63
GSE54994 CDH13 1012 8 10 35
GSE60625 CDH13 1012 4 0 7
GSE74703 CDH13 1012 2 7 27
GSE74704 CDH13 1012 3 2 15
TCGA CDH13 1012 24 26 46

Total number of gains: 104; Total number of losses: 78; Total Number of normals: 306.  

 

Somatic mutations of CDH13:

 

Generating mutation plots.

 

Highly correlated genes for CDH13:

 

Showing top 20/696 corelated genes with mean PCC>0.5.
Gene1 Gene2 Mean PCC Num. Datasets Num. PCC<0 Num. PCC>0.5
CDH13SPECC10.713059303
CDH13NUDCD20.707526404
CDH13PPP1R210.70702303
CDH13SCAMP10.704041303
CDH13CPT1A0.700875303
CDH13PIKFYVE0.694502303
CDH13RUNX30.691687303
CDH13CYP27C10.688418707
CDH13NAPG0.686408303
CDH13C6orf1410.680825504
CDH13PTGFRN0.666069606
CDH13MRPL140.662623404
CDH13CLSPN0.662459504
CDH13LRP120.6597110010
CDH13JKAMP0.659544706
CDH13ANLN0.658119707
CDH13DNMBP0.655538303
CDH13AJUBA0.653891706
CDH13WDR540.652027707
CDH13XRCC40.651132706

For details and further investigation, click here