| Full name: chromodomain helicase DNA binding protein 9 | Alias Symbol: FLJ12178|KIAA0308|BC022889 | ||
| Type: protein-coding gene | Cytoband: 16q12.2 | ||
| Entrez ID: 80205 | HGNC ID: HGNC:25701 | Ensembl Gene: ENSG00000177200 | OMIM ID: 616936 |
| Drug and gene relationship at DGIdb | |||
Expression of CHD9:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | CHD9 | 80205 | 212616_at | -0.0176 | 0.9701 | |
| GSE20347 | CHD9 | 80205 | 212616_at | -0.3302 | 0.0126 | |
| GSE23400 | CHD9 | 80205 | 212616_at | -0.3196 | 0.0001 | |
| GSE26886 | CHD9 | 80205 | 212616_at | 0.1099 | 0.6496 | |
| GSE29001 | CHD9 | 80205 | 212616_at | -0.3691 | 0.1990 | |
| GSE38129 | CHD9 | 80205 | 212616_at | -0.3771 | 0.0546 | |
| GSE45670 | CHD9 | 80205 | 212616_at | -0.3689 | 0.0053 | |
| GSE53622 | CHD9 | 80205 | 114686 | -0.1902 | 0.0007 | |
| GSE53624 | CHD9 | 80205 | 84822 | -0.0924 | 0.2237 | |
| GSE63941 | CHD9 | 80205 | 212616_at | -0.9685 | 0.0356 | |
| GSE77861 | CHD9 | 80205 | 212616_at | -0.0131 | 0.9647 | |
| GSE97050 | CHD9 | 80205 | A_24_P942250 | -0.3001 | 0.2657 | |
| SRP007169 | CHD9 | 80205 | RNAseq | -0.4522 | 0.1393 | |
| SRP008496 | CHD9 | 80205 | RNAseq | -0.1452 | 0.5033 | |
| SRP064894 | CHD9 | 80205 | RNAseq | -0.4376 | 0.1092 | |
| SRP133303 | CHD9 | 80205 | RNAseq | 0.0091 | 0.9389 | |
| SRP159526 | CHD9 | 80205 | RNAseq | -0.6826 | 0.0160 | |
| SRP193095 | CHD9 | 80205 | RNAseq | -0.3119 | 0.0020 | |
| SRP219564 | CHD9 | 80205 | RNAseq | -0.6262 | 0.1581 | |
| TCGA | CHD9 | 80205 | RNAseq | -0.0552 | 0.2447 |
Upregulated datasets: 0; Downregulated datasets: 0.
Survival by CHD9 expression:
 |  |  |
| GSE53622 | GSE53624 | TCGA |
Note: Click image to view full size file.
Copy number change of CHD9:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | CHD9 | 80205 | 3 | 1 | 26 | |
| GSE20123 | CHD9 | 80205 | 3 | 1 | 26 | |
| GSE43470 | CHD9 | 80205 | 2 | 7 | 34 | |
| GSE46452 | CHD9 | 80205 | 38 | 1 | 20 | |
| GSE47630 | CHD9 | 80205 | 11 | 7 | 22 | |
| GSE54993 | CHD9 | 80205 | 2 | 5 | 63 | |
| GSE54994 | CHD9 | 80205 | 6 | 10 | 37 | |
| GSE60625 | CHD9 | 80205 | 4 | 0 | 7 | |
| GSE74703 | CHD9 | 80205 | 2 | 4 | 30 | |
| GSE74704 | CHD9 | 80205 | 3 | 1 | 16 | |
| TCGA | CHD9 | 80205 | 26 | 12 | 58 |
Total number of gains: 100; Total number of losses: 49; Total Number of normals: 339.
Somatic mutations of CHD9:
Generating mutation plots.
Highly correlated genes for CHD9:
Showing top 20/340 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| CHD9 | HOXA3 | 0.771542 | 3 | 0 | 3 |
| CHD9 | KRAS | 0.747546 | 3 | 0 | 3 |
| CHD9 | ZNF292 | 0.747266 | 3 | 0 | 3 |
| CHD9 | TIFA | 0.686663 | 3 | 0 | 3 |
| CHD9 | AKIRIN2 | 0.682409 | 3 | 0 | 3 |
| CHD9 | PRKACG | 0.676015 | 3 | 0 | 3 |
| CHD9 | EFR3B | 0.669732 | 3 | 0 | 3 |
| CHD9 | MID2 | 0.668877 | 3 | 0 | 3 |
| CHD9 | TMEM120A | 0.651914 | 3 | 0 | 3 |
| CHD9 | ZDHHC2 | 0.649808 | 3 | 0 | 3 |
| CHD9 | TRAPPC8 | 0.645025 | 7 | 0 | 7 |
| CHD9 | SEC31A | 0.639533 | 4 | 0 | 4 |
| CHD9 | ATXN7 | 0.636507 | 6 | 0 | 4 |
| CHD9 | CNR1 | 0.634711 | 3 | 0 | 3 |
| CHD9 | USP4 | 0.629524 | 6 | 0 | 5 |
| CHD9 | SUOX | 0.627419 | 4 | 0 | 3 |
| CHD9 | TANC1 | 0.626382 | 4 | 0 | 3 |
| CHD9 | ID4 | 0.619008 | 5 | 0 | 4 |
| CHD9 | RAB14 | 0.617847 | 4 | 0 | 3 |
| CHD9 | BEX4 | 0.614386 | 4 | 0 | 3 |
For details and further investigation, click here
