| Full name: CAP-Gly domain containing linker protein 3 | Alias Symbol: CLIPR-59|RSNL1 | ||
| Type: protein-coding gene | Cytoband: 19q13.12 | ||
| Entrez ID: 25999 | HGNC ID: HGNC:24314 | Ensembl Gene: ENSG00000105270 | OMIM ID: 607382 |
| Drug and gene relationship at DGIdb | |||
Expression of CLIP3:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | CLIP3 | 25999 | 212358_at | -0.8084 | 0.3327 | |
| GSE20347 | CLIP3 | 25999 | 212358_at | 0.0274 | 0.8752 | |
| GSE23400 | CLIP3 | 25999 | 212358_at | -0.3900 | 0.0000 | |
| GSE26886 | CLIP3 | 25999 | 212358_at | 0.3882 | 0.1196 | |
| GSE29001 | CLIP3 | 25999 | 212358_at | -0.1774 | 0.3712 | |
| GSE38129 | CLIP3 | 25999 | 212358_at | -0.5183 | 0.1035 | |
| GSE45670 | CLIP3 | 25999 | 212358_at | -0.7490 | 0.0000 | |
| GSE53622 | CLIP3 | 25999 | 25903 | -0.8960 | 0.0000 | |
| GSE53624 | CLIP3 | 25999 | 25903 | -0.6495 | 0.0000 | |
| GSE63941 | CLIP3 | 25999 | 212358_at | -3.1609 | 0.0000 | |
| GSE77861 | CLIP3 | 25999 | 212358_at | 0.2789 | 0.0321 | |
| GSE97050 | CLIP3 | 25999 | A_23_P50786 | -0.7115 | 0.1942 | |
| SRP007169 | CLIP3 | 25999 | RNAseq | 3.5309 | 0.0015 | |
| SRP064894 | CLIP3 | 25999 | RNAseq | 0.2450 | 0.4760 | |
| SRP133303 | CLIP3 | 25999 | RNAseq | -0.3314 | 0.3537 | |
| SRP159526 | CLIP3 | 25999 | RNAseq | -0.7818 | 0.0542 | |
| SRP193095 | CLIP3 | 25999 | RNAseq | 0.9793 | 0.0000 | |
| SRP219564 | CLIP3 | 25999 | RNAseq | -0.8119 | 0.3040 | |
| TCGA | CLIP3 | 25999 | RNAseq | -0.5144 | 0.0003 |
Upregulated datasets: 1; Downregulated datasets: 1.
Survival by CLIP3 expression:
 |  |  |
| GSE53622 | GSE53624 | TCGA |
Note: Click image to view full size file.
Copy number change of CLIP3:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | CLIP3 | 25999 | 7 | 4 | 19 | |
| GSE20123 | CLIP3 | 25999 | 7 | 3 | 20 | |
| GSE43470 | CLIP3 | 25999 | 3 | 7 | 33 | |
| GSE46452 | CLIP3 | 25999 | 48 | 1 | 10 | |
| GSE47630 | CLIP3 | 25999 | 9 | 5 | 26 | |
| GSE54993 | CLIP3 | 25999 | 17 | 3 | 50 | |
| GSE54994 | CLIP3 | 25999 | 6 | 9 | 38 | |
| GSE60625 | CLIP3 | 25999 | 9 | 0 | 2 | |
| GSE74703 | CLIP3 | 25999 | 3 | 4 | 29 | |
| GSE74704 | CLIP3 | 25999 | 6 | 1 | 13 | |
| TCGA | CLIP3 | 25999 | 22 | 10 | 64 |
Total number of gains: 137; Total number of losses: 47; Total Number of normals: 304.
Somatic mutations of CLIP3:
Generating mutation plots.
Highly correlated genes for CLIP3:
Showing top 20/1128 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| CLIP3 | RBMX2 | 0.872605 | 3 | 0 | 3 |
| CLIP3 | UBXN10 | 0.850834 | 3 | 0 | 3 |
| CLIP3 | MRVI1 | 0.840527 | 7 | 0 | 7 |
| CLIP3 | MIR100HG | 0.838488 | 5 | 0 | 5 |
| CLIP3 | PABPC5 | 0.821691 | 5 | 0 | 5 |
| CLIP3 | ZEB1 | 0.818344 | 3 | 0 | 3 |
| CLIP3 | NEGR1 | 0.814999 | 6 | 0 | 6 |
| CLIP3 | RASL12 | 0.80615 | 11 | 0 | 11 |
| CLIP3 | BHMT2 | 0.800855 | 10 | 0 | 10 |
| CLIP3 | SORCS1 | 0.799576 | 4 | 0 | 4 |
| CLIP3 | TNFSF12 | 0.799453 | 4 | 0 | 4 |
| CLIP3 | FAM20C | 0.798898 | 3 | 0 | 3 |
| CLIP3 | MRGPRF | 0.79792 | 8 | 0 | 7 |
| CLIP3 | C3orf70 | 0.79785 | 6 | 0 | 6 |
| CLIP3 | ABCC1 | 0.79445 | 3 | 0 | 3 |
| CLIP3 | FENDRR | 0.793593 | 5 | 0 | 5 |
| CLIP3 | SLC37A3 | 0.79336 | 3 | 0 | 3 |
| CLIP3 | CYP4V2 | 0.791232 | 4 | 0 | 4 |
| CLIP3 | CYP2U1 | 0.790355 | 6 | 0 | 6 |
| CLIP3 | TXNRD1 | 0.789687 | 3 | 0 | 3 |
For details and further investigation, click here
