| Full name: FOXF1 adjacent non-coding developmental regulatory RNA | Alias Symbol: lincFOXF1|onco-lncRNA-21 | ||
| Type: non-coding RNA | Cytoband: 16q24.1 | ||
| Entrez ID: 400550 | HGNC ID: HGNC:43894 | Ensembl Gene: ENSG00000268388 | OMIM ID: 614975 |
Expression of FENDRR:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | FENDRR | 400550 | 242332_at | -0.7811 | 0.1484 | |
| GSE26886 | FENDRR | 400550 | 242332_at | 0.5076 | 0.0001 | |
| GSE45670 | FENDRR | 400550 | 242332_at | -0.8058 | 0.0000 | |
| GSE53622 | FENDRR | 400550 | 111143 | -1.9565 | 0.0000 | |
| GSE53624 | FENDRR | 400550 | 111143 | -2.1504 | 0.0000 | |
| GSE63941 | FENDRR | 400550 | 242332_at | -3.6724 | 0.0000 | |
| GSE77861 | FENDRR | 400550 | 242332_at | -0.0975 | 0.5445 | |
| SRP007169 | FENDRR | 400550 | RNAseq | 1.9440 | 0.0230 | |
| SRP064894 | FENDRR | 400550 | RNAseq | -0.8418 | 0.0633 | |
| SRP133303 | FENDRR | 400550 | RNAseq | -1.3101 | 0.0000 | |
| SRP159526 | FENDRR | 400550 | RNAseq | -1.0800 | 0.0045 | |
| SRP193095 | FENDRR | 400550 | RNAseq | -0.3685 | 0.3907 |
Upregulated datasets: 1; Downregulated datasets: 5.
Survival by FENDRR expression:
 |  |
| GSE53622 | GSE53624 |
Note: Click image to view full size file.
Copy number change of FENDRR:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | FENDRR | 400550 | 5 | 2 | 23 | |
| GSE20123 | FENDRR | 400550 | 5 | 2 | 23 | |
| GSE43470 | FENDRR | 400550 | 2 | 11 | 30 | |
| GSE46452 | FENDRR | 400550 | 38 | 1 | 20 | |
| GSE47630 | FENDRR | 400550 | 11 | 9 | 20 | |
| GSE54993 | FENDRR | 400550 | 3 | 4 | 63 | |
| GSE54994 | FENDRR | 400550 | 9 | 11 | 33 | |
| GSE60625 | FENDRR | 400550 | 4 | 0 | 7 | |
| GSE74703 | FENDRR | 400550 | 1 | 8 | 27 | |
| GSE74704 | FENDRR | 400550 | 3 | 2 | 15 | |
| TCGA | FENDRR | 400550 | 27 | 15 | 54 |
Total number of gains: 108; Total number of losses: 65; Total Number of normals: 315.
Somatic mutations of FENDRR:
Generating mutation plots.
Highly correlated genes for FENDRR:
Showing top 20/676 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| FENDRR | MRVI1 | 0.879926 | 5 | 0 | 5 |
| FENDRR | PDE5A | 0.873007 | 5 | 0 | 5 |
| FENDRR | NEGR1 | 0.857511 | 5 | 0 | 5 |
| FENDRR | ASPA | 0.842051 | 5 | 0 | 5 |
| FENDRR | ASB5 | 0.834268 | 5 | 0 | 5 |
| FENDRR | SYNPO2 | 0.831071 | 5 | 0 | 5 |
| FENDRR | CBX7 | 0.824393 | 4 | 0 | 4 |
| FENDRR | BHMT2 | 0.823281 | 6 | 0 | 5 |
| FENDRR | TMEM100 | 0.821593 | 5 | 0 | 5 |
| FENDRR | PRR26 | 0.81816 | 4 | 0 | 4 |
| FENDRR | TCF21 | 0.817736 | 5 | 0 | 5 |
| FENDRR | CNTN4 | 0.816524 | 3 | 0 | 3 |
| FENDRR | APOD | 0.812508 | 4 | 0 | 4 |
| FENDRR | ITGA7 | 0.809825 | 4 | 0 | 4 |
| FENDRR | MSRB3 | 0.807023 | 5 | 0 | 5 |
| FENDRR | MYOC | 0.805797 | 4 | 0 | 4 |
| FENDRR | RSPO2 | 0.80528 | 3 | 0 | 3 |
| FENDRR | NOVA1 | 0.803116 | 4 | 0 | 4 |
| FENDRR | PRUNE2 | 0.801769 | 6 | 0 | 6 |
| FENDRR | GREM2 | 0.801491 | 5 | 0 | 5 |
For details and further investigation, click here
