| Full name: clarin 3 | Alias Symbol: MGC32871|USH3AL1 | ||
| Type: protein-coding gene | Cytoband: 10q26.2 | ||
| Entrez ID: 119467 | HGNC ID: HGNC:20795 | Ensembl Gene: ENSG00000180745 | OMIM ID: |
| Drug and gene relationship at DGIdb | |||
Expression of CLRN3:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | CLRN3 | 119467 | 229777_at | -0.1211 | 0.7134 | |
| GSE26886 | CLRN3 | 119467 | 229777_at | 0.1265 | 0.2711 | |
| GSE45670 | CLRN3 | 119467 | 229777_at | 0.1044 | 0.2928 | |
| GSE53622 | CLRN3 | 119467 | 127657 | 0.0377 | 0.8300 | |
| GSE53624 | CLRN3 | 119467 | 127657 | 0.8026 | 0.0000 | |
| GSE63941 | CLRN3 | 119467 | 229777_at | -0.0590 | 0.7399 | |
| GSE77861 | CLRN3 | 119467 | 229777_at | -0.0265 | 0.8014 | |
| TCGA | CLRN3 | 119467 | RNAseq | -2.2701 | 0.0084 |
Upregulated datasets: 0; Downregulated datasets: 1.
Survival by CLRN3 expression:
 |  |  |
| GSE53622 | GSE53624 | TCGA |
Note: Click image to view full size file.
Copy number change of CLRN3:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | CLRN3 | 119467 | 2 | 7 | 21 | |
| GSE20123 | CLRN3 | 119467 | 2 | 7 | 21 | |
| GSE43470 | CLRN3 | 119467 | 0 | 10 | 33 | |
| GSE46452 | CLRN3 | 119467 | 0 | 11 | 48 | |
| GSE47630 | CLRN3 | 119467 | 4 | 13 | 23 | |
| GSE54993 | CLRN3 | 119467 | 8 | 1 | 61 | |
| GSE54994 | CLRN3 | 119467 | 1 | 9 | 43 | |
| GSE60625 | CLRN3 | 119467 | 0 | 0 | 11 | |
| GSE74703 | CLRN3 | 119467 | 0 | 6 | 30 | |
| GSE74704 | CLRN3 | 119467 | 2 | 3 | 15 | |
| TCGA | CLRN3 | 119467 | 7 | 27 | 62 |
Total number of gains: 26; Total number of losses: 94; Total Number of normals: 368.
Somatic mutations of CLRN3:
Generating mutation plots.
Highly correlated genes for CLRN3:
Showing top 20/39 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| CLRN3 | MPP2 | 0.738304 | 3 | 0 | 3 |
| CLRN3 | PNMT | 0.705602 | 3 | 0 | 3 |
| CLRN3 | CHST8 | 0.683355 | 3 | 0 | 3 |
| CLRN3 | MAP1A | 0.682121 | 3 | 0 | 3 |
| CLRN3 | NPTX1 | 0.670731 | 3 | 0 | 3 |
| CLRN3 | GIPC3 | 0.657823 | 3 | 0 | 3 |
| CLRN3 | CYP17A1 | 0.653947 | 3 | 0 | 3 |
| CLRN3 | DEFB125 | 0.648416 | 3 | 0 | 3 |
| CLRN3 | OR1F1 | 0.646375 | 3 | 0 | 3 |
| CLRN3 | MYBPH | 0.64483 | 3 | 0 | 3 |
| CLRN3 | CTNNA2 | 0.641591 | 3 | 0 | 3 |
| CLRN3 | CCR10 | 0.627049 | 3 | 0 | 3 |
| CLRN3 | AFMID | 0.6249 | 3 | 0 | 3 |
| CLRN3 | GUCA1A | 0.622968 | 3 | 0 | 3 |
| CLRN3 | LILRB5 | 0.61025 | 3 | 0 | 3 |
| CLRN3 | SGCA | 0.609896 | 4 | 0 | 3 |
| CLRN3 | TRIM10 | 0.609479 | 3 | 0 | 3 |
| CLRN3 | CCL27 | 0.608556 | 3 | 0 | 3 |
| CLRN3 | SYP | 0.60817 | 3 | 0 | 3 |
| CLRN3 | TPSD1 | 0.604777 | 3 | 0 | 3 |
For details and further investigation, click here
