COL15A1

 

Full name: collagen type XV alpha 1 chain Alias Symbol: 
Type: protein-coding gene Cytoband: 9q22.33
Entrez ID: 1306 HGNC ID: HGNC:2192 Ensembl Gene: ENSG00000204291 OMIM ID: 120325
Drug and gene relationship at DGIdb

 

Expression of COL15A1:

 

Dataset Gene EntrezID Probe Log2FC Adj.pValue Expression
GSE17351 COL15A1 1306 203477_at -0.5335 0.6570
GSE20347 COL15A1 1306 203477_at 0.0665 0.8537
GSE23400 COL15A1 1306 203477_at 0.3302 0.1638
GSE26886 COL15A1 1306 203477_at 0.7403 0.2057
GSE29001 COL15A1 1306 203477_at -0.4049 0.5713
GSE38129 COL15A1 1306 203477_at -0.1990 0.6862
GSE45670 COL15A1 1306 203477_at -0.8786 0.2032
GSE53622 COL15A1 1306 30855 0.0987 0.5117
GSE53624 COL15A1 1306 30855 0.3081 0.0175
GSE63941 COL15A1 1306 203477_at -6.2388 0.0000
GSE77861 COL15A1 1306 203477_at 1.6973 0.0411
GSE97050 COL15A1 1306 A_23_P112554 0.1850 0.5222
SRP007169 COL15A1 1306 RNAseq 2.0969 0.0000
SRP008496 COL15A1 1306 RNAseq 2.1454 0.0000
SRP064894 COL15A1 1306 RNAseq 0.8108 0.0106
SRP133303 COL15A1 1306 RNAseq 0.5404 0.0984
SRP159526 COL15A1 1306 RNAseq 0.2722 0.5254
SRP193095 COL15A1 1306 RNAseq 1.5964 0.0000
SRP219564 COL15A1 1306 RNAseq 0.1223 0.8658
TCGA COL15A1 1306 RNAseq -0.2609 0.0065

Upregulated datasets: 4; Downregulated datasets: 1.  

 

Survival by COL15A1 expression:

 

GSE53622GSE53624TCGA

 

Note: Click image to view full size file.  

Copy number change of COL15A1:

 

Dataset Gene EntrezID Gain Loss Normal Detail
GSE15526 COL15A1 1306 5 9 16
GSE20123 COL15A1 1306 5 8 17
GSE43470 COL15A1 1306 6 3 34
GSE46452 COL15A1 1306 6 13 40
GSE47630 COL15A1 1306 1 17 22
GSE54993 COL15A1 1306 3 3 64
GSE54994 COL15A1 1306 8 11 34
GSE60625 COL15A1 1306 0 0 11
GSE74703 COL15A1 1306 5 3 28
GSE74704 COL15A1 1306 3 5 12
TCGA COL15A1 1306 27 22 47

Total number of gains: 69; Total number of losses: 94; Total Number of normals: 325.  

 

Somatic mutations of COL15A1:

 

Generating mutation plots.

 

Highly correlated genes for COL15A1:

 

Showing top 20/989 corelated genes with mean PCC>0.5.
Gene1 Gene2 Mean PCC Num. Datasets Num. PCC<0 Num. PCC>0.5
COL15A1CYP4V20.797946303
COL15A1SMPD10.789173404
COL15A1CD930.77682412012
COL15A1LAMA40.77488412012
COL15A1C11orf960.774853505
COL15A1TLK20.772046303
COL15A1CNRIP10.763788908
COL15A1FILIP1L0.76371713013
COL15A1GNG110.75395813012
COL15A1ARHGAP170.753655303
COL15A1ENG0.75019411011
COL15A1PECAM10.73705911010
COL15A1PMP220.73528913012
COL15A1ANGPTL20.73528911010
COL15A1ANXA60.72928412010
COL15A1CRISPLD20.7290812012
COL15A1RARRES20.72736111010
COL15A1PCSK50.724887303
COL15A1DNM3OS0.721695403
COL15A1FBN10.72070311010

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