| Full name: collagen beta(1-O)galactosyltransferase 2 | Alias Symbol: KIAA0584 | ||
| Type: protein-coding gene | Cytoband: 1q25.3 | ||
| Entrez ID: 23127 | HGNC ID: HGNC:16790 | Ensembl Gene: ENSG00000198756 | OMIM ID: 617533 |
Expression of COLGALT2:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | COLGALT2 | 23127 | 209883_at | -0.2861 | 0.5842 | |
| GSE20347 | COLGALT2 | 23127 | 209883_at | 0.1681 | 0.1626 | |
| GSE23400 | COLGALT2 | 23127 | 209883_at | -0.0557 | 0.4031 | |
| GSE26886 | COLGALT2 | 23127 | 209883_at | 1.0368 | 0.0417 | |
| GSE29001 | COLGALT2 | 23127 | 209883_at | 0.2120 | 0.4479 | |
| GSE38129 | COLGALT2 | 23127 | 209883_at | -0.0171 | 0.9362 | |
| GSE45670 | COLGALT2 | 23127 | 209883_at | -0.2838 | 0.3628 | |
| GSE53622 | COLGALT2 | 23127 | 24159 | 0.4275 | 0.0372 | |
| GSE53624 | COLGALT2 | 23127 | 24159 | 0.5124 | 0.0032 | |
| GSE63941 | COLGALT2 | 23127 | 209883_at | -0.6725 | 0.4423 | |
| GSE77861 | COLGALT2 | 23127 | 237382_at | -0.1183 | 0.3849 | |
| SRP007169 | COLGALT2 | 23127 | RNAseq | 3.5786 | 0.0022 | |
| SRP133303 | COLGALT2 | 23127 | RNAseq | 0.4487 | 0.3832 | |
| SRP159526 | COLGALT2 | 23127 | RNAseq | 2.6700 | 0.0000 |
Upregulated datasets: 3; Downregulated datasets: 0.
Survival by COLGALT2 expression:
 |  |
| GSE53622 | GSE53624 |
Note: Click image to view full size file.
Copy number change of COLGALT2:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | COLGALT2 | 23127 | 12 | 0 | 18 | |
| GSE20123 | COLGALT2 | 23127 | 12 | 0 | 18 | |
| GSE43470 | COLGALT2 | 23127 | 7 | 1 | 35 | |
| GSE46452 | COLGALT2 | 23127 | 3 | 1 | 55 | |
| GSE47630 | COLGALT2 | 23127 | 14 | 0 | 26 | |
| GSE54993 | COLGALT2 | 23127 | 0 | 6 | 64 | |
| GSE54994 | COLGALT2 | 23127 | 15 | 0 | 38 | |
| GSE60625 | COLGALT2 | 23127 | 0 | 0 | 11 | |
| GSE74703 | COLGALT2 | 23127 | 7 | 1 | 28 | |
| GSE74704 | COLGALT2 | 23127 | 5 | 0 | 15 | |
| TCGA | COLGALT2 | 23127 | 40 | 3 | 53 |
Total number of gains: 115; Total number of losses: 12; Total Number of normals: 361.
Somatic mutations of COLGALT2:
Generating mutation plots.
Highly correlated genes for COLGALT2:
Showing top 20/75 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| COLGALT2 | CRELD1 | 0.714318 | 3 | 0 | 3 |
| COLGALT2 | NR2F1-AS1 | 0.710561 | 3 | 0 | 3 |
| COLGALT2 | EPB41L2 | 0.679734 | 4 | 0 | 4 |
| COLGALT2 | SAT2 | 0.668497 | 3 | 0 | 3 |
| COLGALT2 | SLC45A1 | 0.663165 | 3 | 0 | 3 |
| COLGALT2 | RAB6B | 0.648244 | 9 | 0 | 8 |
| COLGALT2 | TSPAN18 | 0.624445 | 5 | 0 | 4 |
| COLGALT2 | GNG7 | 0.6224 | 3 | 0 | 3 |
| COLGALT2 | SCAMP1-AS1 | 0.616475 | 3 | 0 | 3 |
| COLGALT2 | LTBP4 | 0.612176 | 4 | 0 | 4 |
| COLGALT2 | AP2A2 | 0.599644 | 5 | 0 | 4 |
| COLGALT2 | ARHGAP24 | 0.597922 | 5 | 0 | 4 |
| COLGALT2 | RASA3 | 0.59106 | 4 | 0 | 3 |
| COLGALT2 | SOBP | 0.58859 | 4 | 0 | 3 |
| COLGALT2 | TRAF3IP2-AS1 | 0.582958 | 5 | 0 | 4 |
| COLGALT2 | ING1 | 0.580389 | 4 | 0 | 3 |
| COLGALT2 | DYNLRB2 | 0.577525 | 3 | 0 | 3 |
| COLGALT2 | RAB20 | 0.575986 | 4 | 0 | 4 |
| COLGALT2 | ELANE | 0.57438 | 5 | 0 | 3 |
| COLGALT2 | TCEA2 | 0.571641 | 5 | 0 | 4 |
For details and further investigation, click here
