| Full name: copine 3 | Alias Symbol: | ||
| Type: protein-coding gene | Cytoband: 8q21.3 | ||
| Entrez ID: 8895 | HGNC ID: HGNC:2316 | Ensembl Gene: ENSG00000085719 | OMIM ID: 604207 |
| Drug and gene relationship at DGIdb | |||
Expression of CPNE3:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | CPNE3 | 8895 | 202119_s_at | 0.0213 | 0.9779 | |
| GSE20347 | CPNE3 | 8895 | 202119_s_at | -1.0664 | 0.0000 | |
| GSE23400 | CPNE3 | 8895 | 202119_s_at | -0.7188 | 0.0000 | |
| GSE26886 | CPNE3 | 8895 | 202119_s_at | -1.7878 | 0.0000 | |
| GSE29001 | CPNE3 | 8895 | 202119_s_at | -1.2321 | 0.0008 | |
| GSE38129 | CPNE3 | 8895 | 202119_s_at | -0.6984 | 0.0009 | |
| GSE45670 | CPNE3 | 8895 | 202119_s_at | -0.5425 | 0.0012 | |
| GSE53622 | CPNE3 | 8895 | 39889 | -0.8426 | 0.0000 | |
| GSE53624 | CPNE3 | 8895 | 39889 | -1.1838 | 0.0000 | |
| GSE63941 | CPNE3 | 8895 | 202119_s_at | -0.6040 | 0.2385 | |
| GSE77861 | CPNE3 | 8895 | 202119_s_at | -1.0435 | 0.0015 | |
| GSE97050 | CPNE3 | 8895 | A_24_P64126 | -0.4233 | 0.1628 | |
| SRP007169 | CPNE3 | 8895 | RNAseq | -2.5882 | 0.0000 | |
| SRP008496 | CPNE3 | 8895 | RNAseq | -2.3934 | 0.0000 | |
| SRP064894 | CPNE3 | 8895 | RNAseq | -1.2978 | 0.0000 | |
| SRP133303 | CPNE3 | 8895 | RNAseq | -1.2006 | 0.0000 | |
| SRP159526 | CPNE3 | 8895 | RNAseq | -1.1306 | 0.0001 | |
| SRP193095 | CPNE3 | 8895 | RNAseq | -1.5119 | 0.0000 | |
| SRP219564 | CPNE3 | 8895 | RNAseq | -1.1378 | 0.0316 | |
| TCGA | CPNE3 | 8895 | RNAseq | 0.0209 | 0.6671 |
Upregulated datasets: 0; Downregulated datasets: 12.
Survival by CPNE3 expression:
 |  |  |
| GSE53622 | GSE53624 | TCGA |
Note: Click image to view full size file.
Copy number change of CPNE3:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | CPNE3 | 8895 | 14 | 1 | 15 | |
| GSE20123 | CPNE3 | 8895 | 16 | 1 | 13 | |
| GSE43470 | CPNE3 | 8895 | 19 | 1 | 23 | |
| GSE46452 | CPNE3 | 8895 | 21 | 0 | 38 | |
| GSE47630 | CPNE3 | 8895 | 23 | 0 | 17 | |
| GSE54993 | CPNE3 | 8895 | 0 | 20 | 50 | |
| GSE54994 | CPNE3 | 8895 | 32 | 1 | 20 | |
| GSE60625 | CPNE3 | 8895 | 0 | 4 | 7 | |
| GSE74703 | CPNE3 | 8895 | 16 | 1 | 19 | |
| GSE74704 | CPNE3 | 8895 | 10 | 0 | 10 | |
| TCGA | CPNE3 | 8895 | 54 | 2 | 40 |
Total number of gains: 205; Total number of losses: 31; Total Number of normals: 252.
Somatic mutations of CPNE3:
Generating mutation plots.
Highly correlated genes for CPNE3:
Showing top 20/1232 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| CPNE3 | A2ML1 | 0.819027 | 6 | 0 | 6 |
| CPNE3 | NCCRP1 | 0.815736 | 3 | 0 | 3 |
| CPNE3 | FAM214A | 0.81173 | 5 | 0 | 5 |
| CPNE3 | TMPRSS11B | 0.806563 | 6 | 0 | 6 |
| CPNE3 | SHROOM3 | 0.802597 | 5 | 0 | 5 |
| CPNE3 | TCP11L2 | 0.799032 | 4 | 0 | 4 |
| CPNE3 | VSIG10L | 0.792969 | 6 | 0 | 6 |
| CPNE3 | SPINK7 | 0.788769 | 6 | 0 | 6 |
| CPNE3 | RBM20 | 0.787455 | 3 | 0 | 3 |
| CPNE3 | SMAGP | 0.78606 | 11 | 0 | 11 |
| CPNE3 | SCNN1B | 0.778751 | 10 | 0 | 10 |
| CPNE3 | UPK3B | 0.775291 | 3 | 0 | 3 |
| CPNE3 | ENDOU | 0.773754 | 10 | 0 | 10 |
| CPNE3 | SNORA68 | 0.773377 | 3 | 0 | 3 |
| CPNE3 | CNFN | 0.765941 | 6 | 0 | 6 |
| CPNE3 | SCEL | 0.761835 | 10 | 0 | 10 |
| CPNE3 | CXCR2 | 0.761768 | 9 | 0 | 9 |
| CPNE3 | GDPD3 | 0.760352 | 10 | 0 | 10 |
| CPNE3 | CRISP3 | 0.759029 | 10 | 0 | 10 |
| CPNE3 | CLCA4 | 0.756924 | 10 | 0 | 10 |
For details and further investigation, click here
