| Full name: RNA binding motif protein 20 | Alias Symbol: | ||
| Type: protein-coding gene | Cytoband: 10q25.2 | ||
| Entrez ID: 282996 | HGNC ID: HGNC:27424 | Ensembl Gene: ENSG00000203867 | OMIM ID: 613171 |
| Drug and gene relationship at DGIdb | |||
Expression of RBM20:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | RBM20 | 282996 | 238763_at | -1.6057 | 0.2970 | |
| GSE26886 | RBM20 | 282996 | 238763_at | -3.3441 | 0.0000 | |
| GSE45670 | RBM20 | 282996 | 238763_at | -2.6086 | 0.0000 | |
| GSE53622 | RBM20 | 282996 | 24954 | 0.0882 | 0.4854 | |
| GSE53624 | RBM20 | 282996 | 24954 | 0.0691 | 0.4967 | |
| GSE63941 | RBM20 | 282996 | 238763_at | 0.2305 | 0.6522 | |
| GSE77861 | RBM20 | 282996 | 238763_at | -0.9318 | 0.0189 | |
| GSE97050 | RBM20 | 282996 | A_33_P3307163 | 0.3831 | 0.2874 | |
| SRP007169 | RBM20 | 282996 | RNAseq | -5.1122 | 0.0000 | |
| SRP064894 | RBM20 | 282996 | RNAseq | -3.5720 | 0.0000 | |
| SRP133303 | RBM20 | 282996 | RNAseq | -2.6274 | 0.0000 | |
| SRP159526 | RBM20 | 282996 | RNAseq | -3.2912 | 0.0000 | |
| SRP193095 | RBM20 | 282996 | RNAseq | -2.0848 | 0.0000 | |
| SRP219564 | RBM20 | 282996 | RNAseq | -0.9602 | 0.4200 | |
| TCGA | RBM20 | 282996 | RNAseq | -0.9563 | 0.0052 |
Upregulated datasets: 0; Downregulated datasets: 7.
Survival by RBM20 expression:
 |  |  |
| GSE53622 | GSE53624 | TCGA |
Note: Click image to view full size file.
Copy number change of RBM20:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | RBM20 | 282996 | 1 | 9 | 20 | |
| GSE20123 | RBM20 | 282996 | 1 | 8 | 21 | |
| GSE43470 | RBM20 | 282996 | 0 | 7 | 36 | |
| GSE46452 | RBM20 | 282996 | 0 | 11 | 48 | |
| GSE47630 | RBM20 | 282996 | 2 | 14 | 24 | |
| GSE54993 | RBM20 | 282996 | 8 | 0 | 62 | |
| GSE54994 | RBM20 | 282996 | 1 | 10 | 42 | |
| GSE60625 | RBM20 | 282996 | 0 | 0 | 11 | |
| GSE74703 | RBM20 | 282996 | 0 | 5 | 31 | |
| GSE74704 | RBM20 | 282996 | 1 | 4 | 15 | |
| TCGA | RBM20 | 282996 | 4 | 29 | 63 |
Total number of gains: 18; Total number of losses: 97; Total Number of normals: 373.
Somatic mutations of RBM20:
Generating mutation plots.
Highly correlated genes for RBM20:
Showing top 20/1015 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| RBM20 | MTMR10 | 0.841223 | 4 | 0 | 4 |
| RBM20 | PDLIM5 | 0.83279 | 4 | 0 | 4 |
| RBM20 | CD2AP | 0.827577 | 3 | 0 | 3 |
| RBM20 | MGST2 | 0.82469 | 4 | 0 | 4 |
| RBM20 | ELMO2 | 0.819444 | 4 | 0 | 4 |
| RBM20 | PAIP2B | 0.817436 | 4 | 0 | 4 |
| RBM20 | TRIM6 | 0.812834 | 3 | 0 | 3 |
| RBM20 | PRKAB1 | 0.809515 | 4 | 0 | 4 |
| RBM20 | CCDC6 | 0.804029 | 4 | 0 | 4 |
| RBM20 | CHIC2 | 0.802633 | 3 | 0 | 3 |
| RBM20 | CNN3 | 0.802014 | 3 | 0 | 3 |
| RBM20 | DOCK9 | 0.800421 | 4 | 0 | 4 |
| RBM20 | WDR26 | 0.799371 | 4 | 0 | 4 |
| RBM20 | PDZD8 | 0.797708 | 3 | 0 | 3 |
| RBM20 | CUL3 | 0.796865 | 4 | 0 | 4 |
| RBM20 | VSIG2 | 0.79585 | 3 | 0 | 3 |
| RBM20 | GDPD3 | 0.794355 | 3 | 0 | 3 |
| RBM20 | STK39 | 0.79152 | 5 | 0 | 5 |
| RBM20 | TJP1 | 0.790647 | 4 | 0 | 4 |
| RBM20 | CHMP2B | 0.789072 | 4 | 0 | 4 |
For details and further investigation, click here
