SMAGP

 

Full name: small cell adhesion glycoprotein Alias Symbol: MGC149453|MGC149454|hSMAGP
Type: protein-coding gene Cytoband: 12q13.13
Entrez ID: 57228 HGNC ID: HGNC:26918 Ensembl Gene: ENSG00000170545 OMIM ID: 
Drug and gene relationship at DGIdb

 

Expression of SMAGP:

 

Dataset Gene EntrezID Probe Log2FC Adj.pValue Expression
GSE17351 SMAGP 57228 209679_s_at -1.5345 0.1511
GSE20347 SMAGP 57228 209679_s_at -2.0914 0.0000
GSE23400 SMAGP 57228 209679_s_at -1.5126 0.0000
GSE26886 SMAGP 57228 209679_s_at -2.8189 0.0000
GSE29001 SMAGP 57228 209679_s_at -2.0811 0.0000
GSE38129 SMAGP 57228 209679_s_at -1.4300 0.0002
GSE45670 SMAGP 57228 209679_s_at -1.1528 0.0020
GSE53622 SMAGP 57228 28328 -1.7481 0.0000
GSE53624 SMAGP 57228 28328 -2.0385 0.0000
GSE63941 SMAGP 57228 209679_s_at 1.3100 0.0471
GSE77861 SMAGP 57228 209679_s_at -1.6200 0.0044
GSE97050 SMAGP 57228 A_23_P64837 -0.1614 0.8443
SRP007169 SMAGP 57228 RNAseq -3.4881 0.0000
SRP008496 SMAGP 57228 RNAseq -3.2558 0.0000
SRP064894 SMAGP 57228 RNAseq -2.3034 0.0000
SRP133303 SMAGP 57228 RNAseq -1.9228 0.0000
SRP159526 SMAGP 57228 RNAseq -2.7824 0.0000
SRP193095 SMAGP 57228 RNAseq -2.1208 0.0000
SRP219564 SMAGP 57228 RNAseq -2.7169 0.0010
TCGA SMAGP 57228 RNAseq -0.0711 0.5713

Upregulated datasets: 1; Downregulated datasets: 16.  


 

Survival by SMAGP expression:

 

GSE53622GSE53624TCGA

 

Note: Click image to view full size file.  


Copy number change of SMAGP:

 

Dataset Gene EntrezID Gain Loss Normal Detail
GSE15526 SMAGP 57228 8 1 21
GSE20123 SMAGP 57228 8 1 21
GSE43470 SMAGP 57228 4 0 39
GSE46452 SMAGP 57228 8 1 50
GSE47630 SMAGP 57228 11 2 27
GSE54993 SMAGP 57228 0 5 65
GSE54994 SMAGP 57228 3 2 48
GSE60625 SMAGP 57228 0 0 11
GSE74703 SMAGP 57228 3 0 33
GSE74704 SMAGP 57228 5 1 14
TCGA SMAGP 57228 14 11 71

Total number of gains: 64; Total number of losses: 24; Total Number of normals: 400.  


 

Somatic mutations of SMAGP:

 

Generating mutation plots.

 

Highly correlated genes for SMAGP:

 

Showing top 20/1682 corelated genes with mean PCC>0.5.
Gene1 Gene2 Mean PCC Num. Datasets Num. PCC<0 Num. PCC>0.5
SMAGPGDPD30.86122611011
SMAGPC5orf66-AS10.859467606
SMAGPTPRG10.858736606
SMAGPTP53I30.85280711011
SMAGPRMND5B0.8523310010
SMAGPCHP10.85188710010
SMAGPCXCR20.85073410010
SMAGPACPP0.85035812012
SMAGPKLB0.849784606
SMAGPSFTA20.849666404
SMAGPSLC16A60.8451910010
SMAGPENDOU0.84051311011
SMAGPGYS20.83843410010
SMAGPFUT30.83591612012
SMAGPCYSRT10.834896606
SMAGPESPL10.8316512012
SMAGPFAM3D0.830803807
SMAGPEVPL0.82868512011
SMAGPBLNK0.82623311010
SMAGPUPK3B0.823482303

For details and further investigation, click here