| Full name: GAR1 ribonucleoprotein | Alias Symbol: | ||
| Type: protein-coding gene | Cytoband: 4q25 | ||
| Entrez ID: 54433 | HGNC ID: HGNC:14264 | Ensembl Gene: ENSG00000109534 | OMIM ID: 606468 |
| Drug and gene relationship at DGIdb | |||
Expression of GAR1:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | GAR1 | 54433 | 219110_at | 0.5279 | 0.2320 | |
| GSE20347 | GAR1 | 54433 | 219110_at | 0.0468 | 0.7558 | |
| GSE23400 | GAR1 | 54433 | 219110_at | 0.2276 | 0.0013 | |
| GSE26886 | GAR1 | 54433 | 219110_at | -0.0143 | 0.9599 | |
| GSE29001 | GAR1 | 54433 | 219110_at | 0.1692 | 0.6562 | |
| GSE38129 | GAR1 | 54433 | 219110_at | 0.2631 | 0.0868 | |
| GSE45670 | GAR1 | 54433 | 219110_at | 0.1280 | 0.2072 | |
| GSE53622 | GAR1 | 54433 | 93566 | -0.1552 | 0.0279 | |
| GSE53624 | GAR1 | 54433 | 93566 | 0.0248 | 0.7473 | |
| GSE63941 | GAR1 | 54433 | 219110_at | 0.6360 | 0.0416 | |
| GSE77861 | GAR1 | 54433 | 219110_at | -0.0459 | 0.8553 | |
| GSE97050 | GAR1 | 54433 | A_23_P58280 | 0.2321 | 0.4712 | |
| SRP007169 | GAR1 | 54433 | RNAseq | 0.2104 | 0.6675 | |
| SRP064894 | GAR1 | 54433 | RNAseq | 0.1517 | 0.4979 | |
| SRP133303 | GAR1 | 54433 | RNAseq | 0.5373 | 0.0157 | |
| SRP159526 | GAR1 | 54433 | RNAseq | 0.0523 | 0.8368 | |
| SRP193095 | GAR1 | 54433 | RNAseq | -0.0303 | 0.8596 | |
| SRP219564 | GAR1 | 54433 | RNAseq | -0.0066 | 0.9852 | |
| TCGA | GAR1 | 54433 | RNAseq | 0.1878 | 0.0024 |
Upregulated datasets: 0; Downregulated datasets: 0.
Survival by GAR1 expression:
 |  |  |
| GSE53622 | GSE53624 | TCGA |
Note: Click image to view full size file.
Copy number change of GAR1:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | GAR1 | 54433 | 1 | 12 | 17 | |
| GSE20123 | GAR1 | 54433 | 1 | 12 | 17 | |
| GSE43470 | GAR1 | 54433 | 0 | 13 | 30 | |
| GSE46452 | GAR1 | 54433 | 1 | 36 | 22 | |
| GSE47630 | GAR1 | 54433 | 0 | 20 | 20 | |
| GSE54993 | GAR1 | 54433 | 9 | 0 | 61 | |
| GSE54994 | GAR1 | 54433 | 1 | 10 | 42 | |
| GSE60625 | GAR1 | 54433 | 0 | 3 | 8 | |
| GSE74703 | GAR1 | 54433 | 0 | 11 | 25 | |
| GSE74704 | GAR1 | 54433 | 0 | 6 | 14 | |
| TCGA | GAR1 | 54433 | 8 | 35 | 53 |
Total number of gains: 21; Total number of losses: 158; Total Number of normals: 309.
Somatic mutations of GAR1:
Generating mutation plots.
Highly correlated genes for GAR1:
Showing top 20/455 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| GAR1 | PPIL4 | 0.773805 | 3 | 0 | 3 |
| GAR1 | FARS2 | 0.766425 | 3 | 0 | 3 |
| GAR1 | EXOC8 | 0.766282 | 3 | 0 | 3 |
| GAR1 | CELF1 | 0.745235 | 3 | 0 | 3 |
| GAR1 | SFSWAP | 0.744814 | 3 | 0 | 3 |
| GAR1 | ZNF584 | 0.734101 | 3 | 0 | 3 |
| GAR1 | CCAR1 | 0.724415 | 3 | 0 | 3 |
| GAR1 | FAM200A | 0.724178 | 3 | 0 | 3 |
| GAR1 | MRPL47 | 0.722821 | 3 | 0 | 3 |
| GAR1 | SPEN | 0.716604 | 3 | 0 | 3 |
| GAR1 | SLC7A6OS | 0.713668 | 3 | 0 | 3 |
| GAR1 | CALML5 | 0.713437 | 3 | 0 | 3 |
| GAR1 | FKBPL | 0.712856 | 4 | 0 | 4 |
| GAR1 | ZYG11A | 0.712234 | 3 | 0 | 3 |
| GAR1 | DHX33 | 0.711546 | 4 | 0 | 3 |
| GAR1 | ZNF318 | 0.708991 | 3 | 0 | 3 |
| GAR1 | ZNF557 | 0.707557 | 3 | 0 | 3 |
| GAR1 | PIGM | 0.705586 | 3 | 0 | 3 |
| GAR1 | KLHL8 | 0.705488 | 4 | 0 | 3 |
| GAR1 | SCAND1 | 0.705283 | 3 | 0 | 3 |
For details and further investigation, click here
