| Full name: HOXD cluster antisense RNA 2 | Alias Symbol: | ||
| Type: non-coding RNA | Cytoband: 2q31.1 | ||
| Entrez ID: 100506783 | HGNC ID: HGNC:43756 | Ensembl Gene: ENSG00000237380 | OMIM ID: |
Expression of HOXD-AS2:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | HOXD-AS2 | 100506783 | 229493_at | 0.4811 | 0.3408 | |
| GSE26886 | HOXD-AS2 | 100506783 | 229493_at | 0.5736 | 0.0140 | |
| GSE45670 | HOXD-AS2 | 100506783 | 229493_at | 0.5725 | 0.0487 | |
| GSE53622 | HOXD-AS2 | 100506783 | 60251 | 0.9539 | 0.0002 | |
| GSE53624 | HOXD-AS2 | 100506783 | 60251 | 1.6425 | 0.0000 | |
| GSE63941 | HOXD-AS2 | 100506783 | 229493_at | 0.8445 | 0.3806 | |
| GSE77861 | HOXD-AS2 | 100506783 | 229493_at | -0.0176 | 0.9369 | |
| SRP159526 | HOXD-AS2 | 100506783 | RNAseq | 4.0083 | 0.0000 |
Upregulated datasets: 2; Downregulated datasets: 0.
Survival by HOXD-AS2 expression:
 |  |
| GSE53622 | GSE53624 |
Note: Click image to view full size file.
Copy number change of HOXD-AS2:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | HOXD-AS2 | 100506783 | 9 | 0 | 21 | |
| GSE20123 | HOXD-AS2 | 100506783 | 9 | 0 | 21 | |
| GSE43470 | HOXD-AS2 | 100506783 | 5 | 1 | 37 | |
| GSE46452 | HOXD-AS2 | 100506783 | 1 | 4 | 54 | |
| GSE47630 | HOXD-AS2 | 100506783 | 4 | 4 | 32 | |
| GSE54993 | HOXD-AS2 | 100506783 | 0 | 5 | 65 | |
| GSE54994 | HOXD-AS2 | 100506783 | 11 | 4 | 38 | |
| GSE60625 | HOXD-AS2 | 100506783 | 0 | 3 | 8 | |
| GSE74703 | HOXD-AS2 | 100506783 | 4 | 1 | 31 | |
| GSE74704 | HOXD-AS2 | 100506783 | 5 | 0 | 15 |
Total number of gains: 48; Total number of losses: 22; Total Number of normals: 322.
Somatic mutations of HOXD-AS2:
Generating mutation plots.
Highly correlated genes for HOXD-AS2:
Showing all 19 correlated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| HOXD-AS2 | IGHMBP2 | 0.786217 | 3 | 0 | 3 |
| HOXD-AS2 | TONSL | 0.640484 | 3 | 0 | 3 |
| HOXD-AS2 | BICD1 | 0.626146 | 3 | 0 | 3 |
| HOXD-AS2 | PITPNM1 | 0.625271 | 3 | 0 | 3 |
| HOXD-AS2 | LYPD6 | 0.624993 | 3 | 0 | 3 |
| HOXD-AS2 | MAP3K11 | 0.605091 | 4 | 0 | 3 |
| HOXD-AS2 | HOXD8 | 0.603364 | 6 | 0 | 5 |
| HOXD-AS2 | R3HDM1 | 0.589591 | 3 | 0 | 3 |
| HOXD-AS2 | ENPEP | 0.5876 | 3 | 0 | 3 |
| HOXD-AS2 | LINC00460 | 0.584119 | 4 | 0 | 3 |
| HOXD-AS2 | INTS1 | 0.571317 | 3 | 0 | 3 |
| HOXD-AS2 | DNAL4 | 0.564855 | 3 | 0 | 3 |
| HOXD-AS2 | HOXC9 | 0.556395 | 4 | 0 | 3 |
| HOXD-AS2 | PPP1R9B | 0.55529 | 4 | 0 | 3 |
| HOXD-AS2 | HAGLROS | 0.550319 | 4 | 0 | 3 |
| HOXD-AS2 | FZD9 | 0.543808 | 3 | 0 | 3 |
| HOXD-AS2 | ZDHHC24 | 0.530796 | 5 | 0 | 3 |
| HOXD-AS2 | PIAS4 | 0.523255 | 4 | 0 | 3 |
| HOXD-AS2 | CDC25C | 0.51215 | 4 | 0 | 3 |
For details and further investigation, click here
