R3HDM1

 

Full name: R3H domain containing 1 Alias Symbol: KIAA0029
Type: protein-coding gene Cytoband: 2q21.3
Entrez ID: 23518 HGNC ID: HGNC:9757 Ensembl Gene: ENSG00000048991 OMIM ID: 
Drug and gene relationship at DGIdb

 

Expression of R3HDM1:

 

Dataset Gene EntrezID Probe Log2FC Adj.pValue Expression
GSE17351 R3HDM1 23518 202754_at 0.4587 0.1154
GSE20347 R3HDM1 23518 202754_at 0.5655 0.0000
GSE23400 R3HDM1 23518 202754_at 0.5788 0.0000
GSE26886 R3HDM1 23518 202754_at 0.4543 0.0028
GSE29001 R3HDM1 23518 202754_at 0.6838 0.0004
GSE38129 R3HDM1 23518 202754_at 0.6032 0.0000
GSE45670 R3HDM1 23518 202754_at 0.5612 0.0028
GSE53622 R3HDM1 23518 63941 0.7549 0.0000
GSE53624 R3HDM1 23518 63941 0.9199 0.0000
GSE63941 R3HDM1 23518 202754_at 0.3257 0.4886
GSE77861 R3HDM1 23518 202754_at 0.6055 0.0031
GSE97050 R3HDM1 23518 A_33_P3224212 0.5796 0.1705
SRP007169 R3HDM1 23518 RNAseq 1.8678 0.0000
SRP008496 R3HDM1 23518 RNAseq 1.9005 0.0000
SRP064894 R3HDM1 23518 RNAseq 0.8115 0.0000
SRP133303 R3HDM1 23518 RNAseq 0.7543 0.0000
SRP159526 R3HDM1 23518 RNAseq 0.8896 0.0001
SRP193095 R3HDM1 23518 RNAseq 0.4771 0.0000
SRP219564 R3HDM1 23518 RNAseq 0.3322 0.3789
TCGA R3HDM1 23518 RNAseq 0.1971 0.0002

Upregulated datasets: 2; Downregulated datasets: 0.  

 

Survival by R3HDM1 expression:

 

GSE53622GSE53624TCGA

 

Note: Click image to view full size file.  

Copy number change of R3HDM1:

 

Dataset Gene EntrezID Gain Loss Normal Detail
GSE15526 R3HDM1 23518 2 4 24
GSE20123 R3HDM1 23518 2 4 24
GSE43470 R3HDM1 23518 2 1 40
GSE46452 R3HDM1 23518 1 4 54
GSE47630 R3HDM1 23518 5 2 33
GSE54993 R3HDM1 23518 0 6 64
GSE54994 R3HDM1 23518 9 0 44
GSE60625 R3HDM1 23518 0 3 8
GSE74703 R3HDM1 23518 2 1 33
GSE74704 R3HDM1 23518 1 1 18
TCGA R3HDM1 23518 21 11 64

Total number of gains: 45; Total number of losses: 37; Total Number of normals: 406.  

 

Somatic mutations of R3HDM1:

 

Generating mutation plots.

 

Highly correlated genes for R3HDM1:

 

Showing top 20/2061 corelated genes with mean PCC>0.5.
Gene1 Gene2 Mean PCC Num. Datasets Num. PCC<0 Num. PCC>0.5
R3HDM1ZNF3170.761798303
R3HDM1C1orf2260.753794404
R3HDM1UHRF10.748629505
R3HDM1SUPT16H0.748487909
R3HDM1LMNB20.74116811011
R3HDM1MASTL0.738689606
R3HDM1ZGRF10.732793404
R3HDM1TOP2A0.72707211010
R3HDM1RPL39L0.71928711011
R3HDM1PLXNA10.71923111011
R3HDM1DNMT10.71920312011
R3HDM1MCM20.71921009
R3HDM1TTL0.717859707
R3HDM1LRP120.71717910010
R3HDM1MINPP10.71281310010
R3HDM1U2SURP0.710164909
R3HDM1CDK40.70894910010
R3HDM1AKR1B10.708845909
R3HDM1CDCA20.708044504
R3HDM1ERCC30.704831009

For details and further investigation, click here