| Full name: lysine demethylase 4D | Alias Symbol: FLJ10251 | ||
| Type: protein-coding gene | Cytoband: 11q21 | ||
| Entrez ID: 55693 | HGNC ID: HGNC:25498 | Ensembl Gene: ENSG00000186280 | OMIM ID: 609766 |
Expression of KDM4D:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | KDM4D | 55693 | 242788_at | 0.1742 | 0.3766 | |
| GSE20347 | KDM4D | 55693 | 220278_at | 0.1696 | 0.0507 | |
| GSE23400 | KDM4D | 55693 | 220278_at | 0.0385 | 0.1004 | |
| GSE26886 | KDM4D | 55693 | 242788_at | 0.0712 | 0.5073 | |
| GSE29001 | KDM4D | 55693 | 220278_at | 0.2773 | 0.0297 | |
| GSE38129 | KDM4D | 55693 | 220278_at | 0.1135 | 0.1450 | |
| GSE45670 | KDM4D | 55693 | 242788_at | 0.1128 | 0.3228 | |
| GSE53622 | KDM4D | 55693 | 803 | 0.6360 | 0.0000 | |
| GSE53624 | KDM4D | 55693 | 803 | 0.9641 | 0.0000 | |
| GSE63941 | KDM4D | 55693 | 242788_at | 0.2301 | 0.2436 | |
| GSE77861 | KDM4D | 55693 | 242788_at | -0.0451 | 0.7427 | |
| GSE97050 | KDM4D | 55693 | A_23_P127406 | -0.0587 | 0.8772 | |
| SRP007169 | KDM4D | 55693 | RNAseq | 1.4110 | 0.0540 | |
| SRP133303 | KDM4D | 55693 | RNAseq | 0.0152 | 0.9603 | |
| SRP159526 | KDM4D | 55693 | RNAseq | 1.0973 | 0.0224 | |
| SRP219564 | KDM4D | 55693 | RNAseq | 0.3915 | 0.4278 | |
| TCGA | KDM4D | 55693 | RNAseq | 0.5712 | 0.0002 |
Upregulated datasets: 1; Downregulated datasets: 0.
Survival by KDM4D expression:
 |  |  |
| GSE53622 | GSE53624 | TCGA |
Note: Click image to view full size file.
Copy number change of KDM4D:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | KDM4D | 55693 | 3 | 8 | 19 | |
| GSE20123 | KDM4D | 55693 | 3 | 8 | 19 | |
| GSE43470 | KDM4D | 55693 | 2 | 5 | 36 | |
| GSE46452 | KDM4D | 55693 | 5 | 24 | 30 | |
| GSE47630 | KDM4D | 55693 | 2 | 19 | 19 | |
| GSE54993 | KDM4D | 55693 | 8 | 2 | 60 | |
| GSE54994 | KDM4D | 55693 | 7 | 18 | 28 | |
| GSE60625 | KDM4D | 55693 | 0 | 3 | 8 | |
| GSE74703 | KDM4D | 55693 | 1 | 4 | 31 | |
| GSE74704 | KDM4D | 55693 | 3 | 4 | 13 | |
| TCGA | KDM4D | 55693 | 11 | 43 | 42 |
Total number of gains: 45; Total number of losses: 138; Total Number of normals: 305.
Somatic mutations of KDM4D:
Generating mutation plots.
Highly correlated genes for KDM4D:
Showing top 20/381 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| KDM4D | SAAL1 | 0.65811 | 4 | 0 | 4 |
| KDM4D | CLSPN | 0.657996 | 4 | 0 | 3 |
| KDM4D | ORAI1 | 0.656662 | 3 | 0 | 3 |
| KDM4D | PRDX3 | 0.650805 | 4 | 0 | 4 |
| KDM4D | MRPS23 | 0.646896 | 4 | 0 | 4 |
| KDM4D | CKAP2L | 0.644038 | 4 | 0 | 3 |
| KDM4D | BOLA3 | 0.634458 | 4 | 0 | 3 |
| KDM4D | SLC35B2 | 0.633373 | 3 | 0 | 3 |
| KDM4D | ZBTB41 | 0.631006 | 3 | 0 | 3 |
| KDM4D | KLHL12 | 0.628581 | 4 | 0 | 4 |
| KDM4D | SLC25A17 | 0.62545 | 6 | 0 | 5 |
| KDM4D | HEATR6 | 0.619536 | 5 | 0 | 4 |
| KDM4D | DDIAS | 0.615906 | 3 | 0 | 3 |
| KDM4D | VRK1 | 0.615905 | 5 | 0 | 4 |
| KDM4D | DDX20 | 0.613112 | 4 | 0 | 3 |
| KDM4D | PANK4 | 0.612893 | 3 | 0 | 3 |
| KDM4D | ACACA | 0.611539 | 3 | 0 | 3 |
| KDM4D | ABCF1 | 0.611303 | 3 | 0 | 3 |
| KDM4D | ZNF280C | 0.610097 | 3 | 0 | 3 |
| KDM4D | HEATR1 | 0.607704 | 5 | 0 | 5 |
For details and further investigation, click here
