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Multi-Omics Database of ESCC

 

LIMD1-AS1

 

Full name: LIMD1 antisense RNA 1 Alias Symbol: 
Type: non-coding RNA Cytoband: 3p21.31
Entrez ID: 644714 HGNC ID: HGNC:44107 Ensembl Gene: ENSG00000230530 OMIM ID: 
Drug and gene relationship at DGIdb

 

Expression of LIMD1-AS1:

 

Dataset Gene EntrezID Probe Log2FC Adj.pValue Expression
GSE17351 LIMD1-AS1 644714 233541_at -0.0665 0.7852
GSE26886 LIMD1-AS1 644714 233541_at -0.2573 0.0251
GSE45670 LIMD1-AS1 644714 233541_at 0.0074 0.9490
GSE63941 LIMD1-AS1 644714 233541_at 0.1866 0.1897
GSE77861 LIMD1-AS1 644714 233541_at -0.1628 0.0924
SRP007169 LIMD1-AS1 644714 RNAseq -0.2881 0.5764
SRP008496 LIMD1-AS1 644714 RNAseq 0.2164 0.6498
SRP159526 LIMD1-AS1 644714 RNAseq 0.2631 0.5974
SRP219564 LIMD1-AS1 644714 RNAseq 1.1284 0.2601

Upregulated datasets: 0; Downregulated datasets: 0.  

 

Copy number change of LIMD1-AS1:

 

Dataset Gene EntrezID Gain Loss Normal Detail
GSE15526 LIMD1-AS1 644714 0 17 13
GSE20123 LIMD1-AS1 644714 0 18 12
GSE43470 LIMD1-AS1 644714 0 20 23
GSE46452 LIMD1-AS1 644714 2 17 40
GSE47630 LIMD1-AS1 644714 1 24 15
GSE54993 LIMD1-AS1 644714 7 2 61
GSE54994 LIMD1-AS1 644714 0 36 17
GSE60625 LIMD1-AS1 644714 5 0 6
GSE74703 LIMD1-AS1 644714 0 15 21
GSE74704 LIMD1-AS1 644714 0 12 8

Total number of gains: 15; Total number of losses: 161; Total Number of normals: 216.  

 

Somatic mutations of LIMD1-AS1:

 

Generating mutation plots.

 

Highly correlated genes for LIMD1-AS1:

 

Showing top 20/181 corelated genes with mean PCC>0.5.
Gene1 Gene2 Mean PCC Num. Datasets Num. PCC<0 Num. PCC>0.5
LIMD1-AS1ASCL30.721171303
LIMD1-AS1MRVI1-AS10.688773303
LIMD1-AS1IRX10.683402303
LIMD1-AS1FGF40.682379303
LIMD1-AS1SOX100.673604504
LIMD1-AS1AMHR20.672047303
LIMD1-AS1SMAD1-AS20.66956303
LIMD1-AS1RARG0.66738303
LIMD1-AS1GPR620.666902303
LIMD1-AS1OR2H10.663377303
LIMD1-AS1CRIP20.661504303
LIMD1-AS1PSG20.652901303
LIMD1-AS1MRGPRX20.652022404
LIMD1-AS1TCL60.651581404
LIMD1-AS1LINC006360.651469303
LIMD1-AS1MROH80.647522303
LIMD1-AS1CYP4A110.646408303
LIMD1-AS1OR7C10.645679303
LIMD1-AS1NLRP120.645297403
LIMD1-AS1CHRNA20.644812403

For details and further investigation, click here