| Full name: long intergenic non-protein coding RNA 163 | Alias Symbol: NLC1-A|NLC1A | ||
| Type: non-coding RNA | Cytoband: 21q22.3 | ||
| Entrez ID: 727699 | HGNC ID: HGNC:33165 | Ensembl Gene: ENSG00000234880 | OMIM ID: 610259 |
| Drug and gene relationship at DGIdb | |||
Expression of LINC00163:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | LINC00163 | 727699 | 1562034_at | -0.2883 | 0.1942 | |
| GSE26886 | LINC00163 | 727699 | 1562034_at | 0.1441 | 0.1907 | |
| GSE45670 | LINC00163 | 727699 | 1562034_at | 0.0386 | 0.6945 | |
| GSE53622 | LINC00163 | 727699 | 27984 | -0.1793 | 0.0515 | |
| GSE53624 | LINC00163 | 727699 | 27984 | -0.2111 | 0.0607 | |
| GSE63941 | LINC00163 | 727699 | 1562034_at | 0.0891 | 0.5718 | |
| GSE77861 | LINC00163 | 727699 | 1562034_at | -0.0622 | 0.5247 |
Upregulated datasets: 0; Downregulated datasets: 0.
Survival by LINC00163 expression:
 |  |
| GSE53622 | GSE53624 |
Note: Click image to view full size file.
Copy number change of LINC00163:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | LINC00163 | 727699 | 2 | 8 | 20 | |
| GSE20123 | LINC00163 | 727699 | 2 | 8 | 20 | |
| GSE43470 | LINC00163 | 727699 | 0 | 13 | 30 | |
| GSE46452 | LINC00163 | 727699 | 1 | 21 | 37 | |
| GSE47630 | LINC00163 | 727699 | 6 | 17 | 17 | |
| GSE54993 | LINC00163 | 727699 | 8 | 1 | 61 | |
| GSE54994 | LINC00163 | 727699 | 5 | 8 | 40 | |
| GSE60625 | LINC00163 | 727699 | 0 | 0 | 11 | |
| GSE74703 | LINC00163 | 727699 | 0 | 10 | 26 | |
| GSE74704 | LINC00163 | 727699 | 1 | 4 | 15 | |
| TCGA | LINC00163 | 727699 | 9 | 38 | 49 |
Total number of gains: 34; Total number of losses: 128; Total Number of normals: 326.
Somatic mutations of LINC00163:
Generating mutation plots.
Highly correlated genes for LINC00163:
Showing top 20/191 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| LINC00163 | MROH7 | 0.74506 | 3 | 0 | 3 |
| LINC00163 | INSL3 | 0.720967 | 3 | 0 | 3 |
| LINC00163 | INSC | 0.719165 | 3 | 0 | 3 |
| LINC00163 | AGXT | 0.710163 | 3 | 0 | 3 |
| LINC00163 | TRPV6 | 0.704092 | 3 | 0 | 3 |
| LINC00163 | KCNF1 | 0.69635 | 3 | 0 | 3 |
| LINC00163 | HGFAC | 0.694425 | 3 | 0 | 3 |
| LINC00163 | TMEM255A | 0.684871 | 3 | 0 | 3 |
| LINC00163 | SAMD4A | 0.679199 | 4 | 0 | 4 |
| LINC00163 | CCDC154 | 0.678797 | 3 | 0 | 3 |
| LINC00163 | WDR87 | 0.678787 | 5 | 0 | 4 |
| LINC00163 | CPLX2 | 0.678119 | 3 | 0 | 3 |
| LINC00163 | NUTM1 | 0.67545 | 3 | 0 | 3 |
| LINC00163 | SCTR | 0.668326 | 3 | 0 | 3 |
| LINC00163 | SYCE1 | 0.667455 | 4 | 0 | 3 |
| LINC00163 | KCNK3 | 0.6657 | 4 | 0 | 3 |
| LINC00163 | GRM1 | 0.656112 | 4 | 0 | 4 |
| LINC00163 | KCNJ13 | 0.655148 | 3 | 0 | 3 |
| LINC00163 | ROM1 | 0.651564 | 3 | 0 | 3 |
| LINC00163 | DEFB108B | 0.651355 | 4 | 0 | 3 |
For details and further investigation, click here
