| Full name: long intergenic non-protein coding RNA 240 | Alias Symbol: bA373D17.1 | ||
| Type: non-coding RNA | Cytoband: 6p22.2 | ||
| Entrez ID: 100133205 | HGNC ID: HGNC:18772 | Ensembl Gene: ENSG00000224843 | OMIM ID: |
| Drug and gene relationship at DGIdb | |||
Expression of LINC00240:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | LINC00240 | 100133205 | 1568854_at | 0.5703 | 0.2131 | |
| GSE26886 | LINC00240 | 100133205 | 1568854_at | 0.4908 | 0.0496 | |
| GSE45670 | LINC00240 | 100133205 | 1568854_at | 0.5770 | 0.0245 | |
| GSE53622 | LINC00240 | 100133205 | 36363 | 0.6590 | 0.0000 | |
| GSE53624 | LINC00240 | 100133205 | 36363 | 1.2001 | 0.0000 | |
| GSE63941 | LINC00240 | 100133205 | 1568854_at | 0.1783 | 0.4407 | |
| GSE77861 | LINC00240 | 100133205 | 1568854_at | 0.0275 | 0.8380 | |
| SRP159526 | LINC00240 | 100133205 | RNAseq | 2.0221 | 0.0018 | |
| SRP219564 | LINC00240 | 100133205 | RNAseq | 1.4642 | 0.0370 |
Upregulated datasets: 3; Downregulated datasets: 0.
Survival by LINC00240 expression:
 |  |
| GSE53622 | GSE53624 |
Note: Click image to view full size file.
Copy number change of LINC00240:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | LINC00240 | 100133205 | 4 | 2 | 24 | |
| GSE20123 | LINC00240 | 100133205 | 4 | 2 | 24 | |
| GSE43470 | LINC00240 | 100133205 | 5 | 0 | 38 | |
| GSE46452 | LINC00240 | 100133205 | 1 | 10 | 48 | |
| GSE47630 | LINC00240 | 100133205 | 8 | 4 | 28 | |
| GSE54993 | LINC00240 | 100133205 | 2 | 1 | 67 | |
| GSE54994 | LINC00240 | 100133205 | 11 | 6 | 36 | |
| GSE60625 | LINC00240 | 100133205 | 0 | 1 | 10 | |
| GSE74703 | LINC00240 | 100133205 | 5 | 0 | 31 | |
| GSE74704 | LINC00240 | 100133205 | 0 | 1 | 19 | |
| TCGA | LINC00240 | 100133205 | 16 | 20 | 60 |
Total number of gains: 56; Total number of losses: 47; Total Number of normals: 385.
Somatic mutations of LINC00240:
Generating mutation plots.
Highly correlated genes for LINC00240:
Showing top 20/123 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| LINC00240 | TRAF5 | 0.634881 | 3 | 0 | 3 |
| LINC00240 | ZNF518B | 0.629948 | 4 | 0 | 3 |
| LINC00240 | NONO | 0.61786 | 4 | 0 | 3 |
| LINC00240 | CIC | 0.615378 | 3 | 0 | 3 |
| LINC00240 | APOC1 | 0.611634 | 5 | 0 | 4 |
| LINC00240 | UBXN2B | 0.610655 | 3 | 0 | 3 |
| LINC00240 | IFT122 | 0.606794 | 4 | 0 | 4 |
| LINC00240 | PPAT | 0.605427 | 5 | 0 | 4 |
| LINC00240 | DHFR | 0.598601 | 3 | 0 | 3 |
| LINC00240 | DHX16 | 0.597868 | 4 | 0 | 3 |
| LINC00240 | RCN1 | 0.59489 | 5 | 0 | 4 |
| LINC00240 | TMEM39B | 0.59253 | 4 | 0 | 3 |
| LINC00240 | TAPBP | 0.587835 | 5 | 0 | 3 |
| LINC00240 | TCF24 | 0.587269 | 4 | 0 | 3 |
| LINC00240 | SLC5A12 | 0.587151 | 3 | 0 | 3 |
| LINC00240 | NAA38 | 0.587074 | 4 | 0 | 3 |
| LINC00240 | HOXD13 | 0.58485 | 4 | 0 | 3 |
| LINC00240 | IL17RB | 0.582069 | 4 | 0 | 3 |
| LINC00240 | MUTYH | 0.581937 | 4 | 0 | 4 |
| LINC00240 | MCM3 | 0.577309 | 4 | 0 | 3 |
For details and further investigation, click here
