| Full name: long intergenic non-protein coding RNA 424 | Alias Symbol: | ||
| Type: non-coding RNA | Cytoband: 13q12.11 | ||
| Entrez ID: 100874182 | HGNC ID: HGNC:42815 | Ensembl Gene: ENSG00000226722 | OMIM ID: |
Expression of LINC00424:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | LINC00424 | 100874182 | 1562081_a_at | -0.1439 | 0.5423 | |
| GSE26886 | LINC00424 | 100874182 | 1562081_a_at | -0.2066 | 0.1047 | |
| GSE45670 | LINC00424 | 100874182 | 1562081_a_at | 0.1484 | 0.0335 | |
| GSE53622 | LINC00424 | 100874182 | 18295 | 0.2684 | 0.0049 | |
| GSE53624 | LINC00424 | 100874182 | 18295 | 0.8216 | 0.0000 | |
| GSE63941 | LINC00424 | 100874182 | 1562081_a_at | 0.1708 | 0.2460 | |
| GSE77861 | LINC00424 | 100874182 | 1562081_a_at | -0.1836 | 0.0916 |
Upregulated datasets: 0; Downregulated datasets: 0.
Survival by LINC00424 expression:
 |  |
| GSE53622 | GSE53624 |
Note: Click image to view full size file.
Copy number change of LINC00424:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | LINC00424 | 100874182 | 1 | 14 | 15 | |
| GSE20123 | LINC00424 | 100874182 | 1 | 13 | 16 | |
| GSE43470 | LINC00424 | 100874182 | 2 | 13 | 28 | |
| GSE46452 | LINC00424 | 100874182 | 0 | 33 | 26 | |
| GSE47630 | LINC00424 | 100874182 | 3 | 26 | 11 | |
| GSE54993 | LINC00424 | 100874182 | 11 | 2 | 57 | |
| GSE54994 | LINC00424 | 100874182 | 1 | 13 | 39 | |
| GSE60625 | LINC00424 | 100874182 | 0 | 3 | 8 | |
| GSE74703 | LINC00424 | 100874182 | 2 | 10 | 24 | |
| GSE74704 | LINC00424 | 100874182 | 0 | 11 | 9 | |
| TCGA | LINC00424 | 100874182 | 6 | 43 | 47 |
Total number of gains: 27; Total number of losses: 181; Total Number of normals: 280.
Somatic mutations of LINC00424:
Generating mutation plots.
Highly correlated genes for LINC00424:
Showing top 20/50 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| LINC00424 | APOA2 | 0.695566 | 3 | 0 | 3 |
| LINC00424 | SULT2B1 | 0.695245 | 3 | 0 | 3 |
| LINC00424 | PSCA | 0.674361 | 3 | 0 | 3 |
| LINC00424 | SPNS2 | 0.668313 | 3 | 0 | 3 |
| LINC00424 | CLIC3 | 0.638828 | 3 | 0 | 3 |
| LINC00424 | PHF7 | 0.638127 | 3 | 0 | 3 |
| LINC00424 | PRSS55 | 0.63135 | 4 | 0 | 3 |
| LINC00424 | PRSS2 | 0.627307 | 3 | 0 | 3 |
| LINC00424 | FAM214B | 0.613765 | 3 | 0 | 3 |
| LINC00424 | CSNK1A1 | 0.611975 | 4 | 0 | 3 |
| LINC00424 | EML3 | 0.608727 | 3 | 0 | 3 |
| LINC00424 | NCR2 | 0.607438 | 4 | 0 | 4 |
| LINC00424 | SPTBN2 | 0.604065 | 3 | 0 | 3 |
| LINC00424 | LRP2 | 0.603502 | 3 | 0 | 3 |
| LINC00424 | LRRC29 | 0.603346 | 3 | 0 | 3 |
| LINC00424 | LINC00557 | 0.60322 | 3 | 0 | 3 |
| LINC00424 | BCKDHA | 0.599527 | 3 | 0 | 3 |
| LINC00424 | KLK4 | 0.594728 | 5 | 0 | 3 |
| LINC00424 | CARS-AS1 | 0.594297 | 4 | 0 | 3 |
| LINC00424 | IL17RC | 0.587443 | 4 | 0 | 3 |
For details and further investigation, click here
