| Full name: long intergenic non-protein coding RNA 938 | Alias Symbol: | ||
| Type: non-coding RNA | Cytoband: 12q12 | ||
| Entrez ID: 400027 | HGNC ID: HGNC:48630 | Ensembl Gene: | OMIM ID: |
| Drug and gene relationship at DGIdb | |||
Expression of LINC00938:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | LINC00938 | 400027 | 226413_at | -1.0581 | 0.0596 | |
| GSE26886 | LINC00938 | 400027 | 226413_at | -0.8540 | 0.0198 | |
| GSE45670 | LINC00938 | 400027 | 226413_at | -0.9563 | 0.0001 | |
| GSE63941 | LINC00938 | 400027 | 226413_at | 0.0043 | 0.9961 | |
| GSE77861 | LINC00938 | 400027 | 226413_at | -0.4100 | 0.2413 | |
| SRP007169 | LINC00938 | 400027 | RNAseq | 1.1178 | 0.1649 | |
| SRP008496 | LINC00938 | 400027 | RNAseq | -0.6680 | 0.0223 | |
| SRP064894 | LINC00938 | 400027 | RNAseq | -0.8099 | 0.0000 | |
| SRP133303 | LINC00938 | 400027 | RNAseq | -0.5196 | 0.0063 | |
| SRP159526 | LINC00938 | 400027 | RNAseq | 0.0376 | 0.8922 | |
| SRP193095 | LINC00938 | 400027 | RNAseq | -0.4139 | 0.0038 | |
| SRP219564 | LINC00938 | 400027 | RNAseq | -0.7447 | 0.0406 |
Upregulated datasets: 0; Downregulated datasets: 0.
Copy number change of LINC00938:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | LINC00938 | 400027 | 6 | 1 | 23 | |
| GSE20123 | LINC00938 | 400027 | 6 | 1 | 23 | |
| GSE43470 | LINC00938 | 400027 | 3 | 1 | 39 | |
| GSE46452 | LINC00938 | 400027 | 8 | 1 | 50 | |
| GSE47630 | LINC00938 | 400027 | 11 | 2 | 27 | |
| GSE54993 | LINC00938 | 400027 | 0 | 6 | 64 | |
| GSE54994 | LINC00938 | 400027 | 7 | 1 | 45 | |
| GSE60625 | LINC00938 | 400027 | 0 | 0 | 11 | |
| GSE74703 | LINC00938 | 400027 | 3 | 1 | 32 | |
| GSE74704 | LINC00938 | 400027 | 3 | 1 | 16 |
Total number of gains: 47; Total number of losses: 15; Total Number of normals: 330.
Somatic mutations of LINC00938:
Generating mutation plots.
Highly correlated genes for LINC00938:
Showing top 20/309 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| LINC00938 | FNBP1 | 0.782799 | 3 | 0 | 3 |
| LINC00938 | RBPMS | 0.750768 | 3 | 0 | 3 |
| LINC00938 | GAB2 | 0.721789 | 3 | 0 | 3 |
| LINC00938 | RBPMS-AS1 | 0.71765 | 3 | 0 | 3 |
| LINC00938 | KCNAB1 | 0.716389 | 3 | 0 | 3 |
| LINC00938 | GSN | 0.715609 | 3 | 0 | 3 |
| LINC00938 | PCCA | 0.711797 | 3 | 0 | 3 |
| LINC00938 | EZH1 | 0.705118 | 3 | 0 | 3 |
| LINC00938 | RORA | 0.704872 | 4 | 0 | 4 |
| LINC00938 | OXR1 | 0.704431 | 4 | 0 | 4 |
| LINC00938 | MITF | 0.70141 | 3 | 0 | 3 |
| LINC00938 | SH3BGRL2 | 0.700675 | 4 | 0 | 4 |
| LINC00938 | CCDC28A | 0.699728 | 3 | 0 | 3 |
| LINC00938 | SNTB1 | 0.696354 | 3 | 0 | 3 |
| LINC00938 | SLC4A4 | 0.694727 | 3 | 0 | 3 |
| LINC00938 | PTN | 0.690033 | 4 | 0 | 4 |
| LINC00938 | SLC27A6 | 0.684802 | 4 | 0 | 3 |
| LINC00938 | EFHC2 | 0.683664 | 3 | 0 | 3 |
| LINC00938 | FAM172A | 0.683583 | 4 | 0 | 3 |
| LINC00938 | METTL7A | 0.682946 | 4 | 0 | 4 |
For details and further investigation, click here
