| Full name: long intergenic non-protein coding RNA 939 | Alias Symbol: | ||
| Type: non-coding RNA | Cytoband: 12q24.32 | ||
| Entrez ID: 400084 | HGNC ID: HGNC:48631 | Ensembl Gene: ENSG00000249267 | OMIM ID: |
Expression of LINC00939:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | LINC00939 | 400084 | 216209_at | 0.1030 | 0.6780 | |
| GSE20347 | LINC00939 | 400084 | 216209_at | 0.0093 | 0.9275 | |
| GSE23400 | LINC00939 | 400084 | 216209_at | -0.0845 | 0.0187 | |
| GSE26886 | LINC00939 | 400084 | 216209_at | -0.0227 | 0.8828 | |
| GSE29001 | LINC00939 | 400084 | 216209_at | -0.2190 | 0.2225 | |
| GSE38129 | LINC00939 | 400084 | 216209_at | -0.0037 | 0.9606 | |
| GSE45670 | LINC00939 | 400084 | 216209_at | 0.1430 | 0.3484 | |
| GSE53622 | LINC00939 | 400084 | 56584 | -0.0032 | 0.9805 | |
| GSE53624 | LINC00939 | 400084 | 56584 | -0.0092 | 0.9268 | |
| GSE63941 | LINC00939 | 400084 | 216209_at | 0.0494 | 0.8579 | |
| GSE77861 | LINC00939 | 400084 | 216209_at | -0.0089 | 0.9573 | |
| SRP133303 | LINC00939 | 400084 | RNAseq | -0.3062 | 0.2788 |
Upregulated datasets: 0; Downregulated datasets: 0.
Survival by LINC00939 expression:
 |  |
| GSE53622 | GSE53624 |
Note: Click image to view full size file.
Copy number change of LINC00939:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | LINC00939 | 400084 | 4 | 4 | 22 | |
| GSE20123 | LINC00939 | 400084 | 3 | 4 | 23 | |
| GSE43470 | LINC00939 | 400084 | 2 | 0 | 41 | |
| GSE46452 | LINC00939 | 400084 | 9 | 1 | 49 | |
| GSE47630 | LINC00939 | 400084 | 9 | 3 | 28 | |
| GSE54993 | LINC00939 | 400084 | 0 | 5 | 65 | |
| GSE54994 | LINC00939 | 400084 | 4 | 8 | 41 | |
| GSE60625 | LINC00939 | 400084 | 0 | 0 | 11 | |
| GSE74703 | LINC00939 | 400084 | 2 | 0 | 34 | |
| GSE74704 | LINC00939 | 400084 | 2 | 3 | 15 | |
| TCGA | LINC00939 | 400084 | 22 | 12 | 62 |
Total number of gains: 57; Total number of losses: 40; Total Number of normals: 391.
Somatic mutations of LINC00939:
Generating mutation plots.
Highly correlated genes for LINC00939:
Showing top 20/131 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| LINC00939 | CACNA1D | 0.664609 | 4 | 0 | 4 |
| LINC00939 | PROP1 | 0.638605 | 4 | 0 | 4 |
| LINC00939 | OLFM1 | 0.626768 | 4 | 0 | 3 |
| LINC00939 | OR2H2 | 0.621314 | 3 | 0 | 3 |
| LINC00939 | BLK | 0.618901 | 3 | 0 | 3 |
| LINC00939 | HDAC11 | 0.616856 | 4 | 0 | 3 |
| LINC00939 | LZTS1 | 0.616584 | 4 | 0 | 3 |
| LINC00939 | SLC6A3 | 0.60734 | 4 | 0 | 4 |
| LINC00939 | APOA1 | 0.606399 | 3 | 0 | 3 |
| LINC00939 | NPPC | 0.605273 | 3 | 0 | 3 |
| LINC00939 | RORB | 0.602865 | 4 | 0 | 3 |
| LINC00939 | OXCT2 | 0.601883 | 3 | 0 | 3 |
| LINC00939 | AIRE | 0.597621 | 4 | 0 | 3 |
| LINC00939 | FEV | 0.592258 | 5 | 0 | 4 |
| LINC00939 | CYP17A1 | 0.591779 | 4 | 0 | 3 |
| LINC00939 | SSR4 | 0.589313 | 3 | 0 | 3 |
| LINC00939 | NEUROG2 | 0.585484 | 4 | 0 | 4 |
| LINC00939 | OR1G1 | 0.584527 | 3 | 0 | 3 |
| LINC00939 | IL12RB1 | 0.583194 | 3 | 0 | 3 |
| LINC00939 | GPR35 | 0.582062 | 5 | 0 | 4 |
For details and further investigation, click here
