| Full name: long intergenic non-protein coding RNA 1138 | Alias Symbol: FLJ39739 | ||
| Type: non-coding RNA | Cytoband: 1q21.2 | ||
| Entrez ID: 388685 | HGNC ID: HGNC:49454 | Ensembl Gene: ENSG00000274020 | OMIM ID: |
Expression of LINC01138:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | LINC01138 | 388685 | 1556033_at | 0.0270 | 0.9714 | |
| GSE26886 | LINC01138 | 388685 | 1556033_at | -0.1463 | 0.5252 | |
| GSE45670 | LINC01138 | 388685 | 1556033_at | -0.1786 | 0.4072 | |
| GSE53622 | LINC01138 | 388685 | 151784 | 0.5216 | 0.0000 | |
| GSE53624 | LINC01138 | 388685 | 151784 | 0.4179 | 0.0000 | |
| GSE63941 | LINC01138 | 388685 | 1556033_at | 0.5947 | 0.2793 | |
| GSE77861 | LINC01138 | 388685 | 1556033_at | -0.3221 | 0.0423 | |
| SRP007169 | LINC01138 | 388685 | RNAseq | -0.9063 | 0.1222 | |
| SRP008496 | LINC01138 | 388685 | RNAseq | -0.4861 | 0.1948 | |
| SRP064894 | LINC01138 | 388685 | RNAseq | -0.2761 | 0.1484 | |
| SRP133303 | LINC01138 | 388685 | RNAseq | -0.1879 | 0.2688 | |
| SRP159526 | LINC01138 | 388685 | RNAseq | -0.6070 | 0.2299 | |
| SRP193095 | LINC01138 | 388685 | RNAseq | -0.1563 | 0.2797 | |
| SRP219564 | LINC01138 | 388685 | RNAseq | -0.5035 | 0.1064 |
Upregulated datasets: 0; Downregulated datasets: 0.
Survival by LINC01138 expression:
 |  |
| GSE53622 | GSE53624 |
Note: Click image to view full size file.
Copy number change of LINC01138:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | LINC01138 | 388685 | 13 | 1 | 16 | |
| GSE20123 | LINC01138 | 388685 | 13 | 1 | 16 | |
| GSE43470 | LINC01138 | 388685 | 5 | 1 | 37 | |
| GSE46452 | LINC01138 | 388685 | 2 | 1 | 56 | |
| GSE47630 | LINC01138 | 388685 | 12 | 2 | 26 | |
| GSE54993 | LINC01138 | 388685 | 0 | 3 | 67 | |
| GSE54994 | LINC01138 | 388685 | 16 | 0 | 37 | |
| GSE60625 | LINC01138 | 388685 | 0 | 0 | 11 | |
| GSE74703 | LINC01138 | 388685 | 5 | 1 | 30 | |
| GSE74704 | LINC01138 | 388685 | 6 | 1 | 13 |
Total number of gains: 72; Total number of losses: 11; Total Number of normals: 309.
Somatic mutations of LINC01138:
Generating mutation plots.
Highly correlated genes for LINC01138:
Showing top 20/26 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| LINC01138 | PCNT | 0.761415 | 3 | 0 | 3 |
| LINC01138 | TMCO4 | 0.696913 | 4 | 0 | 3 |
| LINC01138 | C6orf136 | 0.6849 | 3 | 0 | 3 |
| LINC01138 | RREB1 | 0.650272 | 3 | 0 | 3 |
| LINC01138 | ABHD16A | 0.628988 | 3 | 0 | 3 |
| LINC01138 | AGPAT3 | 0.622879 | 4 | 0 | 3 |
| LINC01138 | SCYL3 | 0.602819 | 4 | 0 | 4 |
| LINC01138 | UFC1 | 0.601574 | 4 | 0 | 3 |
| LINC01138 | ZNF813 | 0.600165 | 3 | 0 | 3 |
| LINC01138 | SMARCD1 | 0.599485 | 3 | 0 | 3 |
| LINC01138 | RIPK4 | 0.589342 | 3 | 0 | 3 |
| LINC01138 | KIAA2026 | 0.586489 | 4 | 0 | 3 |
| LINC01138 | ZNF274 | 0.575123 | 4 | 0 | 3 |
| LINC01138 | NPRL2 | 0.570309 | 4 | 0 | 3 |
| LINC01138 | PRR15L | 0.569476 | 4 | 0 | 3 |
| LINC01138 | SETMAR | 0.563354 | 3 | 0 | 3 |
| LINC01138 | BCL11A | 0.560787 | 4 | 0 | 3 |
| LINC01138 | HMGN1 | 0.552708 | 4 | 0 | 3 |
| LINC01138 | SAMD3 | 0.539423 | 3 | 0 | 3 |
| LINC01138 | PRDM4 | 0.527498 | 4 | 0 | 3 |
For details and further investigation, click here
