CAST

 

Full name: calpastatin Alias Symbol: 
Type: protein-coding gene Cytoband: 5q15
Entrez ID: 831 HGNC ID: HGNC:1515 Ensembl Gene: ENSG00000153113 OMIM ID: 114090
Drug and gene relationship at DGIdb
Screen Evidence:
  • Knocking out of this gene by CRIPR/Cas9 screen found altered tolerance on DNA toxicity in Genotoxic Screens.

 

Expression of CAST:

 

Dataset Gene EntrezID Probe Log2FC Adj.pValue Expression
GSE17351 CAST 831 212586_at -1.4375 0.0086
GSE20347 CAST 831 207467_x_at -1.8732 0.0000
GSE23400 CAST 831 212586_at -1.2519 0.0000
GSE26886 CAST 831 207467_x_at -1.6198 0.0000
GSE29001 CAST 831 207467_x_at -1.3600 0.0001
GSE38129 CAST 831 207467_x_at -1.2951 0.0000
GSE45670 CAST 831 207467_x_at -0.6418 0.0024
GSE53622 CAST 831 65591 -1.5889 0.0000
GSE53624 CAST 831 65591 -1.7871 0.0000
GSE63941 CAST 831 207467_x_at -0.0458 0.9437
GSE77861 CAST 831 212586_at -1.4894 0.0003
GSE97050 CAST 831 A_23_P434352 -0.8980 0.0631
SRP007169 CAST 831 RNAseq -2.6143 0.0000
SRP008496 CAST 831 RNAseq -2.5976 0.0000
SRP064894 CAST 831 RNAseq -2.2568 0.0000
SRP133303 CAST 831 RNAseq -1.3057 0.0000
SRP159526 CAST 831 RNAseq -2.1476 0.0000
SRP193095 CAST 831 RNAseq -1.8610 0.0000
SRP219564 CAST 831 RNAseq -1.8113 0.0014
TCGA CAST 831 RNAseq -0.0599 0.3388

Upregulated datasets: 0; Downregulated datasets: 16.  


 

Survival by CAST expression:

 

GSE53622GSE53624TCGA

 

Note: Click image to view full size file.  


Copy number change of CAST:

 

Dataset Gene EntrezID Gain Loss Normal Detail
GSE15526 CAST 831 1 13 16
GSE20123 CAST 831 1 13 16
GSE43470 CAST 831 3 9 31
GSE46452 CAST 831 0 28 31
GSE47630 CAST 831 0 20 20
GSE54993 CAST 831 8 1 61
GSE54994 CAST 831 1 18 34
GSE60625 CAST 831 0 0 11
GSE74703 CAST 831 2 7 27
GSE74704 CAST 831 1 7 12
TCGA CAST 831 3 44 49

Total number of gains: 20; Total number of losses: 160; Total Number of normals: 308.  


 

Somatic mutations of CAST:

 

Generating mutation plots.

 

Highly correlated genes for CAST:

 

Showing top 20/1997 corelated genes with mean PCC>0.5.
Gene1 Gene2 Mean PCC Num. Datasets Num. PCC<0 Num. PCC>0.5
CASTSFTA20.863986404
CASTMPP70.856861707
CASTSASH10.85671511011
CASTCRISP30.85190811011
CASTGBP60.846609404
CASTRAET1E0.845936606
CASTENDOU0.8455911011
CASTCPEB30.84478110010
CASTDOCK90.84204111011
CASTGYS20.84105310010
CASTHCG220.837707606
CASTPRSS270.835888606
CASTMGLL0.83510711011
CASTTRIP100.83392111011
CASTRANBP90.83268611011
CASTSPINK70.831635606
CASTCA130.831333303
CASTC5orf66-AS10.830375606
CASTEHD30.83015811011
CASTKANK10.82597511011

For details and further investigation, click here