| Full name: ligand dependent nuclear receptor interacting factor 1 | Alias Symbol: RIF1|FLJ11269 | ||
| Type: protein-coding gene | Cytoband: 1p13.3 | ||
| Entrez ID: 55791 | HGNC ID: HGNC:30299 | Ensembl Gene: ENSG00000121931 | OMIM ID: 615354 |
Expression of LRIF1:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | LRIF1 | 55791 | 220235_s_at | 0.7329 | 0.1553 | |
| GSE20347 | LRIF1 | 55791 | 220235_s_at | 0.3828 | 0.3135 | |
| GSE23400 | LRIF1 | 55791 | 220235_s_at | 0.4481 | 0.0001 | |
| GSE26886 | LRIF1 | 55791 | 220235_s_at | -0.7929 | 0.0137 | |
| GSE29001 | LRIF1 | 55791 | 220235_s_at | 0.7018 | 0.0470 | |
| GSE38129 | LRIF1 | 55791 | 220235_s_at | 0.6335 | 0.0126 | |
| GSE45670 | LRIF1 | 55791 | 220235_s_at | 0.5492 | 0.2625 | |
| GSE53622 | LRIF1 | 55791 | 31311 | 0.5777 | 0.0000 | |
| GSE53624 | LRIF1 | 55791 | 31311 | 0.4241 | 0.0034 | |
| GSE63941 | LRIF1 | 55791 | 220235_s_at | -0.0841 | 0.9031 | |
| GSE77861 | LRIF1 | 55791 | 220235_s_at | 0.5636 | 0.0879 | |
| GSE97050 | LRIF1 | 55791 | A_23_P160689 | 0.7980 | 0.1483 | |
| SRP007169 | LRIF1 | 55791 | RNAseq | 0.4061 | 0.3720 | |
| SRP008496 | LRIF1 | 55791 | RNAseq | 0.2997 | 0.3199 | |
| SRP064894 | LRIF1 | 55791 | RNAseq | 0.0773 | 0.7727 | |
| SRP133303 | LRIF1 | 55791 | RNAseq | 0.8843 | 0.0002 | |
| SRP159526 | LRIF1 | 55791 | RNAseq | 0.1220 | 0.6470 | |
| SRP193095 | LRIF1 | 55791 | RNAseq | 0.3398 | 0.0222 | |
| SRP219564 | LRIF1 | 55791 | RNAseq | -0.0794 | 0.8936 |
Upregulated datasets: 0; Downregulated datasets: 0.
Survival by LRIF1 expression:
 |  |
| GSE53622 | GSE53624 |
Note: Click image to view full size file.
Copy number change of LRIF1:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | LRIF1 | 55791 | 0 | 11 | 19 | |
| GSE20123 | LRIF1 | 55791 | 0 | 11 | 19 | |
| GSE43470 | LRIF1 | 55791 | 0 | 8 | 35 | |
| GSE46452 | LRIF1 | 55791 | 2 | 1 | 56 | |
| GSE47630 | LRIF1 | 55791 | 9 | 5 | 26 | |
| GSE54993 | LRIF1 | 55791 | 0 | 1 | 69 | |
| GSE54994 | LRIF1 | 55791 | 7 | 4 | 42 | |
| GSE60625 | LRIF1 | 55791 | 0 | 0 | 11 | |
| GSE74703 | LRIF1 | 55791 | 0 | 7 | 29 | |
| GSE74704 | LRIF1 | 55791 | 0 | 7 | 13 | |
| TCGA | LRIF1 | 55791 | 7 | 27 | 62 |
Total number of gains: 25; Total number of losses: 82; Total Number of normals: 381.
Somatic mutations of LRIF1:
Generating mutation plots.
Highly correlated genes for LRIF1:
Showing top 20/653 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| LRIF1 | SASS6 | 0.794418 | 3 | 0 | 3 |
| LRIF1 | LRRC58 | 0.776146 | 3 | 0 | 3 |
| LRIF1 | NCEH1 | 0.772729 | 3 | 0 | 3 |
| LRIF1 | XPO7 | 0.770732 | 3 | 0 | 3 |
| LRIF1 | TRAF7 | 0.765952 | 3 | 0 | 3 |
| LRIF1 | GLRX3 | 0.753171 | 4 | 0 | 4 |
| LRIF1 | ARL13B | 0.750372 | 4 | 0 | 4 |
| LRIF1 | ITGB8 | 0.747787 | 4 | 0 | 3 |
| LRIF1 | PIGX | 0.745968 | 3 | 0 | 3 |
| LRIF1 | SLC39A9 | 0.740891 | 3 | 0 | 3 |
| LRIF1 | TPD52L2 | 0.735576 | 3 | 0 | 3 |
| LRIF1 | TMTC3 | 0.7348 | 4 | 0 | 4 |
| LRIF1 | SENP3 | 0.733195 | 3 | 0 | 3 |
| LRIF1 | FOXE1 | 0.728742 | 3 | 0 | 3 |
| LRIF1 | TMED2 | 0.728482 | 3 | 0 | 3 |
| LRIF1 | LACTB | 0.717598 | 4 | 0 | 4 |
| LRIF1 | ATAD5 | 0.715843 | 3 | 0 | 3 |
| LRIF1 | SCFD1 | 0.713791 | 3 | 0 | 3 |
| LRIF1 | AP4E1 | 0.712932 | 3 | 0 | 3 |
| LRIF1 | UEVLD | 0.712787 | 3 | 0 | 3 |
For details and further investigation, click here
