| Full name: leucine rich repeat containing 39 | Alias Symbol: MGC14816|myomasp | ||
| Type: protein-coding gene | Cytoband: 1p21.2 | ||
| Entrez ID: 127495 | HGNC ID: HGNC:28228 | Ensembl Gene: ENSG00000122477 | OMIM ID: |
| Drug and gene relationship at DGIdb | |||
Expression of LRRC39:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | LRRC39 | 127495 | 227532_at | 0.1239 | 0.5523 | |
| GSE26886 | LRRC39 | 127495 | 227532_at | -0.0774 | 0.5289 | |
| GSE45670 | LRRC39 | 127495 | 1559580_at | -0.0941 | 0.6908 | |
| GSE63941 | LRRC39 | 127495 | 227532_at | 0.1444 | 0.4716 | |
| GSE77861 | LRRC39 | 127495 | 227532_at | -0.0370 | 0.7875 | |
| GSE97050 | LRRC39 | 127495 | A_33_P3300665 | 0.1729 | 0.5589 | |
| SRP064894 | LRRC39 | 127495 | RNAseq | 0.7487 | 0.0351 | |
| SRP133303 | LRRC39 | 127495 | RNAseq | -0.2837 | 0.2406 | |
| SRP159526 | LRRC39 | 127495 | RNAseq | -0.0412 | 0.9585 | |
| SRP193095 | LRRC39 | 127495 | RNAseq | -0.2957 | 0.0744 | |
| SRP219564 | LRRC39 | 127495 | RNAseq | -0.1122 | 0.7697 | |
| TCGA | LRRC39 | 127495 | RNAseq | -0.0819 | 0.8693 |
Upregulated datasets: 0; Downregulated datasets: 0.
Survival by LRRC39 expression:
 |
| TCGA |
Note: Click image to view full size file.
Copy number change of LRRC39:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | LRRC39 | 127495 | 0 | 10 | 20 | |
| GSE20123 | LRRC39 | 127495 | 0 | 10 | 20 | |
| GSE43470 | LRRC39 | 127495 | 2 | 6 | 35 | |
| GSE46452 | LRRC39 | 127495 | 1 | 1 | 57 | |
| GSE47630 | LRRC39 | 127495 | 9 | 5 | 26 | |
| GSE54993 | LRRC39 | 127495 | 0 | 1 | 69 | |
| GSE54994 | LRRC39 | 127495 | 6 | 3 | 44 | |
| GSE60625 | LRRC39 | 127495 | 0 | 0 | 11 | |
| GSE74703 | LRRC39 | 127495 | 1 | 5 | 30 | |
| GSE74704 | LRRC39 | 127495 | 0 | 6 | 14 | |
| TCGA | LRRC39 | 127495 | 8 | 25 | 63 |
Total number of gains: 27; Total number of losses: 72; Total Number of normals: 389.
Somatic mutations of LRRC39:
Generating mutation plots.
Highly correlated genes for LRRC39:
Showing top 20/25 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| LRRC39 | CYP1A2 | 0.742546 | 3 | 0 | 3 |
| LRRC39 | GPR158 | 0.735196 | 3 | 0 | 3 |
| LRRC39 | RAPGEF4 | 0.712239 | 3 | 0 | 3 |
| LRRC39 | TAP2 | 0.711048 | 3 | 0 | 3 |
| LRRC39 | REL | 0.70954 | 3 | 0 | 3 |
| LRRC39 | PSME1 | 0.705482 | 3 | 0 | 3 |
| LRRC39 | FNBP1L | 0.696354 | 4 | 0 | 4 |
| LRRC39 | TMEM51 | 0.69362 | 3 | 0 | 3 |
| LRRC39 | ATF7IP | 0.692258 | 3 | 0 | 3 |
| LRRC39 | CLMN | 0.688184 | 3 | 0 | 3 |
| LRRC39 | BRD9 | 0.687905 | 3 | 0 | 3 |
| LRRC39 | SYCP2 | 0.671614 | 3 | 0 | 3 |
| LRRC39 | PPTC7 | 0.651803 | 3 | 0 | 3 |
| LRRC39 | ADPRHL1 | 0.649703 | 3 | 0 | 3 |
| LRRC39 | SLC5A3 | 0.64362 | 4 | 0 | 3 |
| LRRC39 | TDRKH | 0.638449 | 3 | 0 | 3 |
| LRRC39 | TEP1 | 0.63781 | 4 | 0 | 3 |
| LRRC39 | DCUN1D2 | 0.625789 | 4 | 0 | 3 |
| LRRC39 | ZNF706 | 0.603388 | 4 | 0 | 3 |
| LRRC39 | ZNF551 | 0.599501 | 4 | 0 | 3 |
For details and further investigation, click here
