| Full name: LSAMP antisense RNA 1 | Alias Symbol: | ||
| Type: non-coding RNA | Cytoband: 3q13.31 | ||
| Entrez ID: 101926903 | HGNC ID: HGNC:40350 | Ensembl Gene: ENSG00000240922 | OMIM ID: |
Expression of LSAMP-AS1:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | LSAMP-AS1 | 101926903 | 237027_at | 0.3048 | 0.1658 | |
| GSE26886 | LSAMP-AS1 | 101926903 | 237027_at | 0.1154 | 0.4021 | |
| GSE45670 | LSAMP-AS1 | 101926903 | 237027_at | 0.4086 | 0.0043 | |
| GSE63941 | LSAMP-AS1 | 101926903 | 237027_at | 0.2784 | 0.1746 | |
| GSE77861 | LSAMP-AS1 | 101926903 | 237027_at | 0.1538 | 0.4943 | |
| SRP133303 | LSAMP-AS1 | 101926903 | RNAseq | 1.2855 | 0.0007 | |
| SRP159526 | LSAMP-AS1 | 101926903 | RNAseq | 4.8984 | 0.0000 |
Upregulated datasets: 2; Downregulated datasets: 0.
Copy number change of LSAMP-AS1:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | LSAMP-AS1 | 101926903 | 17 | 0 | 13 | |
| GSE20123 | LSAMP-AS1 | 101926903 | 17 | 0 | 13 | |
| GSE43470 | LSAMP-AS1 | 101926903 | 21 | 1 | 21 | |
| GSE46452 | LSAMP-AS1 | 101926903 | 14 | 5 | 40 | |
| GSE47630 | LSAMP-AS1 | 101926903 | 15 | 6 | 19 | |
| GSE54993 | LSAMP-AS1 | 101926903 | 2 | 6 | 62 | |
| GSE54994 | LSAMP-AS1 | 101926903 | 29 | 4 | 20 | |
| GSE60625 | LSAMP-AS1 | 101926903 | 0 | 6 | 5 | |
| GSE74703 | LSAMP-AS1 | 101926903 | 17 | 1 | 18 | |
| GSE74704 | LSAMP-AS1 | 101926903 | 13 | 0 | 7 |
Total number of gains: 145; Total number of losses: 29; Total Number of normals: 218.
Somatic mutations of LSAMP-AS1:
Generating mutation plots.
Highly correlated genes for LSAMP-AS1:
Showing top 20/104 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| LSAMP-AS1 | NAA10 | 0.739507 | 3 | 0 | 3 |
| LSAMP-AS1 | HNRNPK | 0.718026 | 3 | 0 | 3 |
| LSAMP-AS1 | GPAA1 | 0.712386 | 3 | 0 | 3 |
| LSAMP-AS1 | ASCL2 | 0.686435 | 3 | 0 | 3 |
| LSAMP-AS1 | POLR2H | 0.685777 | 3 | 0 | 3 |
| LSAMP-AS1 | PAFAH1B3 | 0.676166 | 3 | 0 | 3 |
| LSAMP-AS1 | YEATS2 | 0.668038 | 3 | 0 | 3 |
| LSAMP-AS1 | SLC45A4 | 0.667973 | 3 | 0 | 3 |
| LSAMP-AS1 | KRI1 | 0.658866 | 3 | 0 | 3 |
| LSAMP-AS1 | EMC10 | 0.65482 | 3 | 0 | 3 |
| LSAMP-AS1 | ZNF579 | 0.654085 | 3 | 0 | 3 |
| LSAMP-AS1 | TRPM2 | 0.652241 | 3 | 0 | 3 |
| LSAMP-AS1 | TMEM39B | 0.649628 | 3 | 0 | 3 |
| LSAMP-AS1 | MED15 | 0.648763 | 3 | 0 | 3 |
| LSAMP-AS1 | SLC6A8 | 0.647409 | 3 | 0 | 3 |
| LSAMP-AS1 | OCIAD2 | 0.645633 | 3 | 0 | 3 |
| LSAMP-AS1 | LONP1 | 0.641683 | 3 | 0 | 3 |
| LSAMP-AS1 | TXNRD2 | 0.640039 | 3 | 0 | 3 |
| LSAMP-AS1 | KIAA0930 | 0.638779 | 3 | 0 | 3 |
| LSAMP-AS1 | ABCF3 | 0.634755 | 3 | 0 | 3 |
For details and further investigation, click here
