| Full name: RAB39A, member RAS oncogene family | Alias Symbol: | ||
| Type: protein-coding gene | Cytoband: 11q22.3 | ||
| Entrez ID: 54734 | HGNC ID: HGNC:16521 | Ensembl Gene: ENSG00000179331 | OMIM ID: |
Expression of RAB39A:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | RAB39A | 54734 | 1554800_at | -0.1767 | 0.5353 | |
| GSE26886 | RAB39A | 54734 | 1554800_at | -0.2767 | 0.1204 | |
| GSE45670 | RAB39A | 54734 | 1554800_at | 0.0578 | 0.5510 | |
| GSE53622 | RAB39A | 54734 | 55871 | 0.6939 | 0.0015 | |
| GSE53624 | RAB39A | 54734 | 55871 | 1.5025 | 0.0000 | |
| GSE63941 | RAB39A | 54734 | 1554800_at | 0.2721 | 0.3517 | |
| GSE77861 | RAB39A | 54734 | 1554800_at | -0.2540 | 0.0783 | |
| SRP133303 | RAB39A | 54734 | RNAseq | 0.8329 | 0.0001 | |
| SRP159526 | RAB39A | 54734 | RNAseq | 2.6812 | 0.0006 |
Upregulated datasets: 2; Downregulated datasets: 0.
Survival by RAB39A expression:
 |  |
| GSE53622 | GSE53624 |
Note: Click image to view full size file.
Copy number change of RAB39A:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | RAB39A | 54734 | 0 | 13 | 17 | |
| GSE20123 | RAB39A | 54734 | 0 | 13 | 17 | |
| GSE43470 | RAB39A | 54734 | 2 | 6 | 35 | |
| GSE46452 | RAB39A | 54734 | 3 | 26 | 30 | |
| GSE47630 | RAB39A | 54734 | 2 | 19 | 19 | |
| GSE54993 | RAB39A | 54734 | 9 | 1 | 60 | |
| GSE54994 | RAB39A | 54734 | 5 | 19 | 29 | |
| GSE60625 | RAB39A | 54734 | 0 | 3 | 8 | |
| GSE74703 | RAB39A | 54734 | 1 | 4 | 31 | |
| GSE74704 | RAB39A | 54734 | 0 | 9 | 11 | |
| TCGA | RAB39A | 54734 | 6 | 48 | 42 |
Total number of gains: 28; Total number of losses: 161; Total Number of normals: 299.
Somatic mutations of RAB39A:
Generating mutation plots.
Highly correlated genes for RAB39A:
Showing top 20/44 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| RAB39A | RASSF4 | 0.628356 | 3 | 0 | 3 |
| RAB39A | RASGRP3 | 0.620356 | 3 | 0 | 3 |
| RAB39A | SUCNR1 | 0.617679 | 3 | 0 | 3 |
| RAB39A | SLC22A16 | 0.608929 | 3 | 0 | 3 |
| RAB39A | KLRD1 | 0.607045 | 3 | 0 | 3 |
| RAB39A | FMN1 | 0.603453 | 3 | 0 | 3 |
| RAB39A | CD84 | 0.602876 | 3 | 0 | 3 |
| RAB39A | ELSPBP1 | 0.60243 | 4 | 0 | 3 |
| RAB39A | RHOH | 0.599494 | 3 | 0 | 3 |
| RAB39A | CD226 | 0.597337 | 3 | 0 | 3 |
| RAB39A | ST8SIA4 | 0.595404 | 3 | 0 | 3 |
| RAB39A | LRRC25 | 0.591052 | 5 | 0 | 4 |
| RAB39A | TMEM150B | 0.589735 | 4 | 0 | 3 |
| RAB39A | CSRP3 | 0.589659 | 3 | 0 | 3 |
| RAB39A | NXPE1 | 0.581391 | 3 | 0 | 3 |
| RAB39A | MS4A6A | 0.578905 | 3 | 0 | 3 |
| RAB39A | TAC3 | 0.577003 | 4 | 0 | 4 |
| RAB39A | KLF14 | 0.57375 | 4 | 0 | 3 |
| RAB39A | LINC01210 | 0.573375 | 4 | 0 | 3 |
| RAB39A | WDR86 | 0.570591 | 3 | 0 | 3 |
For details and further investigation, click here
