| Full name: RAB3D, member RAS oncogene family | Alias Symbol: RAB16|D2-2|RAD3D | ||
| Type: protein-coding gene | Cytoband: 19p13.2 | ||
| Entrez ID: 9545 | HGNC ID: HGNC:9779 | Ensembl Gene: ENSG00000105514 | OMIM ID: 604350 |
| Drug and gene relationship at DGIdb | |||
Expression of RAB3D:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | RAB3D | 9545 | 225001_at | 0.1030 | 0.9153 | |
| GSE20347 | RAB3D | 9545 | 208466_at | -0.1048 | 0.1267 | |
| GSE23400 | RAB3D | 9545 | 208466_at | -0.1201 | 0.0042 | |
| GSE26886 | RAB3D | 9545 | 225001_at | -1.9072 | 0.0000 | |
| GSE29001 | RAB3D | 9545 | 208466_at | -0.1542 | 0.1790 | |
| GSE38129 | RAB3D | 9545 | 208466_at | -0.1354 | 0.0694 | |
| GSE45670 | RAB3D | 9545 | 225001_at | -0.1787 | 0.1455 | |
| GSE53622 | RAB3D | 9545 | 44398 | -1.1047 | 0.0000 | |
| GSE53624 | RAB3D | 9545 | 44398 | -0.7834 | 0.0000 | |
| GSE63941 | RAB3D | 9545 | 225001_at | 1.4700 | 0.0045 | |
| GSE77861 | RAB3D | 9545 | 225001_at | -0.4387 | 0.0158 | |
| GSE97050 | RAB3D | 9545 | A_23_P404678 | -0.4208 | 0.1386 | |
| SRP007169 | RAB3D | 9545 | RNAseq | -1.9792 | 0.0000 | |
| SRP008496 | RAB3D | 9545 | RNAseq | -2.0010 | 0.0000 | |
| SRP064894 | RAB3D | 9545 | RNAseq | -0.2620 | 0.3087 | |
| SRP133303 | RAB3D | 9545 | RNAseq | -1.4265 | 0.0000 | |
| SRP159526 | RAB3D | 9545 | RNAseq | -0.8400 | 0.0466 | |
| SRP193095 | RAB3D | 9545 | RNAseq | -1.2559 | 0.0000 | |
| SRP219564 | RAB3D | 9545 | RNAseq | -0.2338 | 0.6517 | |
| TCGA | RAB3D | 9545 | RNAseq | -0.1551 | 0.0239 |
Upregulated datasets: 1; Downregulated datasets: 6.
Survival by RAB3D expression:
 |  |  |
| GSE53622 | GSE53624 | TCGA |
Note: Click image to view full size file.
Copy number change of RAB3D:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | RAB3D | 9545 | 4 | 2 | 24 | |
| GSE20123 | RAB3D | 9545 | 3 | 1 | 26 | |
| GSE43470 | RAB3D | 9545 | 2 | 6 | 35 | |
| GSE46452 | RAB3D | 9545 | 47 | 1 | 11 | |
| GSE47630 | RAB3D | 9545 | 4 | 7 | 29 | |
| GSE54993 | RAB3D | 9545 | 16 | 3 | 51 | |
| GSE54994 | RAB3D | 9545 | 6 | 13 | 34 | |
| GSE60625 | RAB3D | 9545 | 9 | 0 | 2 | |
| GSE74703 | RAB3D | 9545 | 2 | 4 | 30 | |
| GSE74704 | RAB3D | 9545 | 0 | 1 | 19 | |
| TCGA | RAB3D | 9545 | 17 | 11 | 68 |
Total number of gains: 110; Total number of losses: 49; Total Number of normals: 329.
Somatic mutations of RAB3D:
Generating mutation plots.
Highly correlated genes for RAB3D:
Showing top 20/1348 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| RAB3D | PCGF3 | 0.784213 | 3 | 0 | 3 |
| RAB3D | DDI2 | 0.772448 | 3 | 0 | 3 |
| RAB3D | SNORA68 | 0.769484 | 3 | 0 | 3 |
| RAB3D | TP53RK | 0.763234 | 3 | 0 | 3 |
| RAB3D | ZNF92 | 0.762244 | 3 | 0 | 3 |
| RAB3D | MFSD6 | 0.758338 | 6 | 0 | 6 |
| RAB3D | RETSAT | 0.756488 | 4 | 0 | 4 |
| RAB3D | GPR108 | 0.754148 | 3 | 0 | 3 |
| RAB3D | HDHD2 | 0.749152 | 4 | 0 | 3 |
| RAB3D | ASPG | 0.747933 | 5 | 0 | 5 |
| RAB3D | ACTR3 | 0.742238 | 3 | 0 | 3 |
| RAB3D | HIBCH | 0.740127 | 5 | 0 | 4 |
| RAB3D | ADCY7 | 0.737117 | 3 | 0 | 3 |
| RAB3D | A2ML1 | 0.734143 | 5 | 0 | 5 |
| RAB3D | USP54 | 0.732827 | 7 | 0 | 7 |
| RAB3D | RAB25 | 0.732756 | 8 | 0 | 8 |
| RAB3D | VSIG10L | 0.732239 | 5 | 0 | 5 |
| RAB3D | MGST2 | 0.731776 | 7 | 0 | 6 |
| RAB3D | ZFC3H1 | 0.730118 | 3 | 0 | 3 |
| RAB3D | ULK3 | 0.730048 | 7 | 0 | 7 |
For details and further investigation, click here
