| Full name: RAB40C, member RAS oncogene family | Alias Symbol: RARL | ||
| Type: protein-coding gene | Cytoband: 16p13.3 | ||
| Entrez ID: 57799 | HGNC ID: HGNC:18285 | Ensembl Gene: ENSG00000197562 | OMIM ID: |
Expression of RAB40C:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | RAB40C | 57799 | 227698_s_at | -0.0063 | 0.9954 | |
| GSE20347 | RAB40C | 57799 | 213466_at | -0.0518 | 0.5231 | |
| GSE23400 | RAB40C | 57799 | 213466_at | -0.2258 | 0.0000 | |
| GSE26886 | RAB40C | 57799 | 227698_s_at | 1.0589 | 0.0013 | |
| GSE29001 | RAB40C | 57799 | 213466_at | -0.0763 | 0.5656 | |
| GSE38129 | RAB40C | 57799 | 213466_at | -0.1255 | 0.1358 | |
| GSE45670 | RAB40C | 57799 | 227698_s_at | -0.0923 | 0.6681 | |
| GSE53622 | RAB40C | 57799 | 23878 | -0.0144 | 0.8891 | |
| GSE53624 | RAB40C | 57799 | 23878 | 0.0027 | 0.9755 | |
| GSE63941 | RAB40C | 57799 | 227698_s_at | 1.0408 | 0.0332 | |
| GSE77861 | RAB40C | 57799 | 227698_s_at | 0.0805 | 0.8332 | |
| GSE97050 | RAB40C | 57799 | A_23_P396062 | 0.4448 | 0.1239 | |
| SRP007169 | RAB40C | 57799 | RNAseq | -1.7435 | 0.0000 | |
| SRP008496 | RAB40C | 57799 | RNAseq | -1.5881 | 0.0000 | |
| SRP064894 | RAB40C | 57799 | RNAseq | -0.3750 | 0.1334 | |
| SRP133303 | RAB40C | 57799 | RNAseq | -0.0987 | 0.6010 | |
| SRP159526 | RAB40C | 57799 | RNAseq | -0.1394 | 0.5518 | |
| SRP193095 | RAB40C | 57799 | RNAseq | -0.1573 | 0.1739 | |
| SRP219564 | RAB40C | 57799 | RNAseq | 0.0459 | 0.9132 | |
| TCGA | RAB40C | 57799 | RNAseq | 0.0324 | 0.5807 |
Upregulated datasets: 2; Downregulated datasets: 2.
Survival by RAB40C expression:
 |  |  |
| GSE53622 | GSE53624 | TCGA |
Note: Click image to view full size file.
Copy number change of RAB40C:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | RAB40C | 57799 | 5 | 5 | 20 | |
| GSE20123 | RAB40C | 57799 | 5 | 4 | 21 | |
| GSE43470 | RAB40C | 57799 | 4 | 7 | 32 | |
| GSE46452 | RAB40C | 57799 | 38 | 1 | 20 | |
| GSE47630 | RAB40C | 57799 | 13 | 6 | 21 | |
| GSE54993 | RAB40C | 57799 | 3 | 5 | 62 | |
| GSE54994 | RAB40C | 57799 | 4 | 10 | 39 | |
| GSE60625 | RAB40C | 57799 | 4 | 0 | 7 | |
| GSE74703 | RAB40C | 57799 | 4 | 5 | 27 | |
| GSE74704 | RAB40C | 57799 | 3 | 2 | 15 | |
| TCGA | RAB40C | 57799 | 20 | 15 | 61 |
Total number of gains: 103; Total number of losses: 60; Total Number of normals: 325.
Somatic mutations of RAB40C:
Generating mutation plots.
Highly correlated genes for RAB40C:
Showing top 20/226 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| RAB40C | SIN3A | 0.656702 | 3 | 0 | 3 |
| RAB40C | DVL1 | 0.645652 | 3 | 0 | 3 |
| RAB40C | NUBP2 | 0.645271 | 4 | 0 | 4 |
| RAB40C | IGH | 0.631494 | 4 | 0 | 4 |
| RAB40C | FNDC8 | 0.621038 | 5 | 0 | 5 |
| RAB40C | TCL6 | 0.618667 | 4 | 0 | 4 |
| RAB40C | ANGPT4 | 0.614874 | 5 | 0 | 5 |
| RAB40C | OGFOD1 | 0.611854 | 3 | 0 | 3 |
| RAB40C | LGALS14 | 0.610855 | 3 | 0 | 3 |
| RAB40C | NMRAL1 | 0.604123 | 6 | 0 | 4 |
| RAB40C | BRINP2 | 0.603572 | 4 | 0 | 4 |
| RAB40C | GPR27 | 0.602572 | 3 | 0 | 3 |
| RAB40C | HOXA3 | 0.599543 | 4 | 0 | 3 |
| RAB40C | STAT2 | 0.599418 | 4 | 0 | 3 |
| RAB40C | CYP2A6 | 0.599001 | 5 | 0 | 3 |
| RAB40C | HNF1A | 0.598611 | 4 | 0 | 4 |
| RAB40C | NDOR1 | 0.598422 | 5 | 0 | 4 |
| RAB40C | EVX1 | 0.596836 | 4 | 0 | 3 |
| RAB40C | NEURL1 | 0.595253 | 4 | 0 | 3 |
| RAB40C | MAGEA1 | 0.5943 | 4 | 0 | 3 |
For details and further investigation, click here
