| Full name: RANBP2 like and GRIP domain containing 6 | Alias Symbol: RGP6 | ||
| Type: protein-coding gene | Cytoband: 2q13 | ||
| Entrez ID: 729540 | HGNC ID: HGNC:32419 | Ensembl Gene: ENSG00000183054 | OMIM ID: 612709 |
| Drug and gene relationship at DGIdb | |||
Expression of RGPD6:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE53622 | RGPD6 | 729540 | 9593 | 0.2383 | 0.0409 | |
| GSE53624 | RGPD6 | 729540 | 9593 | 0.1657 | 0.1304 | |
| GSE97050 | RGPD6 | 729540 | A_23_P357985 | -0.0243 | 0.9439 | |
| SRP133303 | RGPD6 | 729540 | RNAseq | 0.3943 | 0.0514 | |
| SRP159526 | RGPD6 | 729540 | RNAseq | 0.2860 | 0.6117 | |
| SRP193095 | RGPD6 | 729540 | RNAseq | 0.0029 | 0.9828 | |
| SRP219564 | RGPD6 | 729540 | RNAseq | -0.8555 | 0.1994 | |
| TCGA | RGPD6 | 729540 | RNAseq | -0.1820 | 0.0035 |
Upregulated datasets: 0; Downregulated datasets: 0.
Survival by RGPD6 expression:
 |  |  |
| GSE53622 | GSE53624 | TCGA |
Note: Click image to view full size file.
Copy number change of RGPD6:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | RGPD6 | 729540 | 4 | 2 | 24 | |
| GSE20123 | RGPD6 | 729540 | 4 | 2 | 24 | |
| GSE43470 | RGPD6 | 729540 | 3 | 1 | 39 | |
| GSE46452 | RGPD6 | 729540 | 1 | 4 | 54 | |
| GSE47630 | RGPD6 | 729540 | 7 | 0 | 33 | |
| GSE54993 | RGPD6 | 729540 | 0 | 6 | 64 | |
| GSE54994 | RGPD6 | 729540 | 10 | 0 | 43 | |
| GSE60625 | RGPD6 | 729540 | 0 | 3 | 8 | |
| GSE74703 | RGPD6 | 729540 | 3 | 1 | 32 | |
| GSE74704 | RGPD6 | 729540 | 2 | 2 | 16 | |
| TCGA | RGPD6 | 729540 | 32 | 5 | 59 |
Total number of gains: 66; Total number of losses: 26; Total Number of normals: 396.
Somatic mutations of RGPD6:
Generating mutation plots.
Highly correlated genes for RGPD6:
Showing all 19 correlated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| RGPD6 | LEPROTL1 | 0.750943 | 3 | 0 | 3 |
| RGPD6 | SLC38A6 | 0.724333 | 3 | 0 | 3 |
| RGPD6 | CCDC84 | 0.68329 | 3 | 0 | 3 |
| RGPD6 | C1orf35 | 0.675103 | 3 | 0 | 3 |
| RGPD6 | TRNAU1AP | 0.669019 | 3 | 0 | 3 |
| RGPD6 | PLGLB1 | 0.667136 | 3 | 0 | 3 |
| RGPD6 | TAS2R43 | 0.666826 | 3 | 0 | 3 |
| RGPD6 | RNPC3 | 0.658835 | 3 | 0 | 3 |
| RGPD6 | MPV17L | 0.656133 | 3 | 0 | 3 |
| RGPD6 | LUC7L3 | 0.652485 | 3 | 0 | 3 |
| RGPD6 | GPR153 | 0.646452 | 3 | 0 | 3 |
| RGPD6 | EBLN2 | 0.643904 | 3 | 0 | 3 |
| RGPD6 | CHRNE | 0.633839 | 3 | 0 | 3 |
| RGPD6 | HERC2 | 0.619275 | 3 | 0 | 3 |
| RGPD6 | ANKS3 | 0.617047 | 3 | 0 | 3 |
| RGPD6 | TNFRSF10C | 0.611018 | 3 | 0 | 3 |
| RGPD6 | LRRC14 | 0.604263 | 3 | 0 | 3 |
| RGPD6 | LRCH3 | 0.589198 | 3 | 0 | 3 |
| RGPD6 | SPDYE1 | 0.57267 | 3 | 0 | 3 |
For details and further investigation, click here
