| Full name: ring finger protein 20 | Alias Symbol: FLJ20382|FLJ11189|KAIA2779|BRE1A|hBRE1|BRE1 | ||
| Type: protein-coding gene | Cytoband: 9q31.1 | ||
| Entrez ID: 56254 | HGNC ID: HGNC:10062 | Ensembl Gene: ENSG00000155827 | OMIM ID: 607699 |
| Drug and gene relationship at DGIdb | |||
Screen Evidence:
| |||
Expression of RNF20:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | RNF20 | 56254 | 222683_at | -0.2188 | 0.5389 | |
| GSE26886 | RNF20 | 56254 | 222683_at | -0.2514 | 0.4371 | |
| GSE45670 | RNF20 | 56254 | 222683_at | -0.0582 | 0.6954 | |
| GSE53622 | RNF20 | 56254 | 8471 | -0.2437 | 0.0000 | |
| GSE53624 | RNF20 | 56254 | 8471 | -0.1957 | 0.0000 | |
| GSE63941 | RNF20 | 56254 | 222683_at | -0.0532 | 0.8886 | |
| GSE77861 | RNF20 | 56254 | 222683_at | -0.0159 | 0.9546 | |
| GSE97050 | RNF20 | 56254 | A_24_P98385 | -0.1824 | 0.3716 | |
| SRP007169 | RNF20 | 56254 | RNAseq | 0.1372 | 0.7096 | |
| SRP008496 | RNF20 | 56254 | RNAseq | 0.0505 | 0.8118 | |
| SRP064894 | RNF20 | 56254 | RNAseq | -0.2210 | 0.0974 | |
| SRP133303 | RNF20 | 56254 | RNAseq | -0.2006 | 0.1310 | |
| SRP159526 | RNF20 | 56254 | RNAseq | -0.2295 | 0.2878 | |
| SRP193095 | RNF20 | 56254 | RNAseq | -0.2989 | 0.0177 | |
| SRP219564 | RNF20 | 56254 | RNAseq | -0.4803 | 0.0358 | |
| TCGA | RNF20 | 56254 | RNAseq | -0.0050 | 0.9135 |
Upregulated datasets: 0; Downregulated datasets: 0.
Survival by RNF20 expression:
 |  |  |
| GSE53622 | GSE53624 | TCGA |
Note: Click image to view full size file.
Copy number change of RNF20:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | RNF20 | 56254 | 4 | 10 | 16 | |
| GSE20123 | RNF20 | 56254 | 5 | 9 | 16 | |
| GSE43470 | RNF20 | 56254 | 6 | 3 | 34 | |
| GSE46452 | RNF20 | 56254 | 6 | 13 | 40 | |
| GSE47630 | RNF20 | 56254 | 1 | 17 | 22 | |
| GSE54993 | RNF20 | 56254 | 3 | 3 | 64 | |
| GSE54994 | RNF20 | 56254 | 9 | 11 | 33 | |
| GSE60625 | RNF20 | 56254 | 0 | 0 | 11 | |
| GSE74703 | RNF20 | 56254 | 5 | 3 | 28 | |
| GSE74704 | RNF20 | 56254 | 2 | 6 | 12 | |
| TCGA | RNF20 | 56254 | 28 | 21 | 47 |
Total number of gains: 69; Total number of losses: 96; Total Number of normals: 323.
Somatic mutations of RNF20:
Generating mutation plots.
Highly correlated genes for RNF20:
Showing top 20/42 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| RNF20 | SCAF8 | 0.657335 | 4 | 0 | 3 |
| RNF20 | ZADH2 | 0.646407 | 3 | 0 | 3 |
| RNF20 | BTBD10 | 0.622193 | 4 | 0 | 3 |
| RNF20 | HACE1 | 0.617466 | 3 | 0 | 3 |
| RNF20 | CREBBP | 0.604043 | 4 | 0 | 3 |
| RNF20 | CTR9 | 0.597127 | 3 | 0 | 3 |
| RNF20 | SWAP70 | 0.595369 | 3 | 0 | 3 |
| RNF20 | ZNF189 | 0.593941 | 4 | 0 | 3 |
| RNF20 | TRIM2 | 0.591881 | 3 | 0 | 3 |
| RNF20 | FUBP3 | 0.581512 | 4 | 0 | 3 |
| RNF20 | ACVR2A | 0.569275 | 3 | 0 | 3 |
| RNF20 | TBC1D13 | 0.567615 | 4 | 0 | 3 |
| RNF20 | WWP2 | 0.567149 | 3 | 0 | 3 |
| RNF20 | VAMP7 | 0.566597 | 3 | 0 | 3 |
| RNF20 | RORA | 0.564919 | 4 | 0 | 3 |
| RNF20 | ZFP37 | 0.563239 | 4 | 0 | 3 |
| RNF20 | CBLL1 | 0.562934 | 4 | 0 | 3 |
| RNF20 | TIMP3 | 0.56197 | 3 | 0 | 3 |
| RNF20 | GLYR1 | 0.55103 | 3 | 0 | 3 |
| RNF20 | SPTLC1 | 0.546153 | 5 | 0 | 4 |
For details and further investigation, click here
