| Full name: RNA 3'-terminal phosphate cyclase | Alias Symbol: RPC|RTC1 | ||
| Type: protein-coding gene | Cytoband: 1p21.2 | ||
| Entrez ID: 8634 | HGNC ID: HGNC:17981 | Ensembl Gene: ENSG00000137996 | OMIM ID: 611286 |
Expression of RTCA:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | RTCA | 8634 | 203594_at | -0.2632 | 0.6233 | |
| GSE20347 | RTCA | 8634 | 203594_at | -0.8806 | 0.0000 | |
| GSE23400 | RTCA | 8634 | 203594_at | -0.1545 | 0.2169 | |
| GSE26886 | RTCA | 8634 | 203594_at | -1.4414 | 0.0000 | |
| GSE29001 | RTCA | 8634 | 203594_at | -0.6624 | 0.0805 | |
| GSE38129 | RTCA | 8634 | 203594_at | -0.3352 | 0.0875 | |
| GSE45670 | RTCA | 8634 | 203594_at | 0.0566 | 0.7964 | |
| GSE53622 | RTCA | 8634 | 59524 | -0.3318 | 0.0000 | |
| GSE53624 | RTCA | 8634 | 59524 | -0.3303 | 0.0000 | |
| GSE63941 | RTCA | 8634 | 203594_at | -0.2272 | 0.6751 | |
| GSE77861 | RTCA | 8634 | 203594_at | -0.7564 | 0.0063 | |
| SRP007169 | RTCA | 8634 | RNAseq | -0.7093 | 0.0371 | |
| SRP008496 | RTCA | 8634 | RNAseq | -0.6071 | 0.0040 | |
| SRP064894 | RTCA | 8634 | RNAseq | -0.1324 | 0.4401 | |
| SRP133303 | RTCA | 8634 | RNAseq | -0.0967 | 0.5383 | |
| SRP159526 | RTCA | 8634 | RNAseq | -1.0187 | 0.0000 | |
| SRP193095 | RTCA | 8634 | RNAseq | -0.5810 | 0.0000 | |
| SRP219564 | RTCA | 8634 | RNAseq | -0.5012 | 0.3533 |
Upregulated datasets: 0; Downregulated datasets: 2.
Survival by RTCA expression:
 |  |
| GSE53622 | GSE53624 |
Note: Click image to view full size file.
Copy number change of RTCA:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | RTCA | 8634 | 0 | 10 | 20 | |
| GSE20123 | RTCA | 8634 | 0 | 10 | 20 | |
| GSE43470 | RTCA | 8634 | 2 | 6 | 35 | |
| GSE46452 | RTCA | 8634 | 1 | 1 | 57 | |
| GSE47630 | RTCA | 8634 | 9 | 5 | 26 | |
| GSE54993 | RTCA | 8634 | 0 | 1 | 69 | |
| GSE54994 | RTCA | 8634 | 6 | 3 | 44 | |
| GSE60625 | RTCA | 8634 | 0 | 0 | 11 | |
| GSE74703 | RTCA | 8634 | 1 | 5 | 30 | |
| GSE74704 | RTCA | 8634 | 0 | 6 | 14 | |
| TCGA | RTCA | 8634 | 8 | 25 | 63 |
Total number of gains: 27; Total number of losses: 72; Total Number of normals: 389.
Somatic mutations of RTCA:
Generating mutation plots.
Highly correlated genes for RTCA:
Showing top 20/1179 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| RTCA | ZCCHC9 | 0.835172 | 3 | 0 | 3 |
| RTCA | ESYT2 | 0.749254 | 3 | 0 | 3 |
| RTCA | GNAI3 | 0.744148 | 11 | 0 | 11 |
| RTCA | SPAG17 | 0.741848 | 3 | 0 | 3 |
| RTCA | GSKIP | 0.734406 | 6 | 0 | 6 |
| RTCA | GPR157 | 0.717898 | 5 | 0 | 5 |
| RTCA | MAML3 | 0.716066 | 3 | 0 | 3 |
| RTCA | ZNF770 | 0.714042 | 4 | 0 | 3 |
| RTCA | TMEM43 | 0.713962 | 3 | 0 | 3 |
| RTCA | SPNS2 | 0.711252 | 3 | 0 | 3 |
| RTCA | THAP2 | 0.710491 | 4 | 0 | 4 |
| RTCA | SH3GLB1 | 0.706171 | 10 | 0 | 9 |
| RTCA | DUSP11 | 0.697924 | 7 | 0 | 7 |
| RTCA | CCNYL1 | 0.697101 | 4 | 0 | 3 |
| RTCA | ATP13A4 | 0.69422 | 4 | 0 | 4 |
| RTCA | GBP6 | 0.692534 | 3 | 0 | 3 |
| RTCA | PDCD6IP | 0.689291 | 10 | 0 | 10 |
| RTCA | TRIM7 | 0.686468 | 3 | 0 | 3 |
| RTCA | AP4B1 | 0.683474 | 4 | 0 | 4 |
| RTCA | ZNRF1 | 0.683177 | 3 | 0 | 3 |
For details and further investigation, click here
