| Full name: small Cajal body-specific RNA 2 | Alias Symbol: mgU2-25/61|HBII-382 | ||
| Type: non-coding RNA | Cytoband: 1q13.1 | ||
| Entrez ID: 677766 | HGNC ID: HGNC:32558 | Ensembl Gene: ENSG00000278249 | OMIM ID: |
| Drug and gene relationship at DGIdb | |||
Expression of SCARNA2:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | SCARNA2 | 677766 | 237137_at | 0.0514 | 0.9140 | |
| GSE26886 | SCARNA2 | 677766 | 237137_at | 0.3992 | 0.0526 | |
| GSE45670 | SCARNA2 | 677766 | 237137_at | -0.2256 | 0.0094 | |
| GSE63941 | SCARNA2 | 677766 | 237137_at | 0.2925 | 0.2491 | |
| GSE77861 | SCARNA2 | 677766 | 237137_at | -0.0679 | 0.4949 | |
| SRP007169 | SCARNA2 | 677766 | RNAseq | -1.2860 | 0.0046 | |
| SRP008496 | SCARNA2 | 677766 | RNAseq | -0.7423 | 0.0334 | |
| SRP133303 | SCARNA2 | 677766 | RNAseq | -0.5950 | 0.0050 | |
| SRP193095 | SCARNA2 | 677766 | RNAseq | -0.2924 | 0.2833 | |
| TCGA | SCARNA2 | 677766 | RNAseq | -0.0962 | 0.6440 |
Upregulated datasets: 0; Downregulated datasets: 1.
Survival by SCARNA2 expression:
 |
| TCGA |
Note: Click image to view full size file.
Copy number change of SCARNA2:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | SCARNA2 | 677766 | 0 | 12 | 18 | |
| GSE20123 | SCARNA2 | 677766 | 0 | 11 | 19 | |
| GSE43470 | SCARNA2 | 677766 | 0 | 8 | 35 | |
| GSE46452 | SCARNA2 | 677766 | 2 | 1 | 56 | |
| GSE47630 | SCARNA2 | 677766 | 9 | 5 | 26 | |
| GSE54993 | SCARNA2 | 677766 | 0 | 1 | 69 | |
| GSE54994 | SCARNA2 | 677766 | 7 | 4 | 42 | |
| GSE60625 | SCARNA2 | 677766 | 0 | 0 | 11 | |
| GSE74703 | SCARNA2 | 677766 | 0 | 6 | 30 | |
| GSE74704 | SCARNA2 | 677766 | 0 | 7 | 13 | |
| TCGA | SCARNA2 | 677766 | 8 | 26 | 62 |
Total number of gains: 26; Total number of losses: 81; Total Number of normals: 381.
Somatic mutations of SCARNA2:
Generating mutation plots.
Highly correlated genes for SCARNA2:
Showing top 20/21 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| SCARNA2 | MPND | 0.647294 | 3 | 0 | 3 |
| SCARNA2 | C10orf53 | 0.643871 | 4 | 0 | 3 |
| SCARNA2 | PRDM16 | 0.630434 | 4 | 0 | 4 |
| SCARNA2 | FRMD1 | 0.625793 | 3 | 0 | 3 |
| SCARNA2 | PTPRT | 0.622373 | 3 | 0 | 3 |
| SCARNA2 | CPNE4 | 0.615565 | 3 | 0 | 3 |
| SCARNA2 | KCNIP1 | 0.610489 | 3 | 0 | 3 |
| SCARNA2 | NR1I2 | 0.604613 | 3 | 0 | 3 |
| SCARNA2 | TSGA13 | 0.602252 | 3 | 0 | 3 |
| SCARNA2 | ACTL6B | 0.600359 | 3 | 0 | 3 |
| SCARNA2 | CT55 | 0.598405 | 3 | 0 | 3 |
| SCARNA2 | CELA3A | 0.585986 | 3 | 0 | 3 |
| SCARNA2 | C9orf16 | 0.584092 | 3 | 0 | 3 |
| SCARNA2 | TCL1A | 0.582312 | 4 | 0 | 3 |
| SCARNA2 | APOM | 0.581191 | 3 | 0 | 3 |
| SCARNA2 | GABRG1 | 0.569402 | 3 | 0 | 3 |
| SCARNA2 | LEMD1-AS1 | 0.556759 | 4 | 0 | 3 |
| SCARNA2 | EEFSEC | 0.556204 | 4 | 0 | 3 |
| SCARNA2 | PODN | 0.528305 | 4 | 0 | 3 |
| SCARNA2 | LINC01118 | 0.52173 | 3 | 0 | 3 |
For details and further investigation, click here
