| Full name: small nuclear RNA activating complex polypeptide 3 | Alias Symbol: SNAP50|PTFbeta|MGC33124|MGC132011 | ||
| Type: protein-coding gene | Cytoband: 9p22.3 | ||
| Entrez ID: 6619 | HGNC ID: HGNC:11136 | Ensembl Gene: ENSG00000164975 | OMIM ID: 602348 |
| Drug and gene relationship at DGIdb | |||
Expression of SNAPC3:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | SNAPC3 | 6619 | 204001_at | -0.6168 | 0.1357 | |
| GSE20347 | SNAPC3 | 6619 | 204001_at | -0.4372 | 0.0027 | |
| GSE23400 | SNAPC3 | 6619 | 210465_s_at | -0.2243 | 0.0000 | |
| GSE26886 | SNAPC3 | 6619 | 204001_at | -0.2297 | 0.4832 | |
| GSE29001 | SNAPC3 | 6619 | 204001_at | -0.1806 | 0.6629 | |
| GSE38129 | SNAPC3 | 6619 | 204001_at | -0.3005 | 0.0217 | |
| GSE45670 | SNAPC3 | 6619 | 210465_s_at | -0.2653 | 0.1961 | |
| GSE53622 | SNAPC3 | 6619 | 5477 | -0.6613 | 0.0000 | |
| GSE53624 | SNAPC3 | 6619 | 5477 | -0.5597 | 0.0000 | |
| GSE63941 | SNAPC3 | 6619 | 210465_s_at | -0.1553 | 0.8610 | |
| GSE77861 | SNAPC3 | 6619 | 210465_s_at | -0.6947 | 0.0109 | |
| GSE97050 | SNAPC3 | 6619 | A_23_P71908 | -0.2446 | 0.2420 | |
| SRP007169 | SNAPC3 | 6619 | RNAseq | -0.7422 | 0.1367 | |
| SRP008496 | SNAPC3 | 6619 | RNAseq | -0.9038 | 0.0026 | |
| SRP064894 | SNAPC3 | 6619 | RNAseq | -0.5902 | 0.0012 | |
| SRP133303 | SNAPC3 | 6619 | RNAseq | -0.2775 | 0.1124 | |
| SRP159526 | SNAPC3 | 6619 | RNAseq | -0.7946 | 0.0013 | |
| SRP193095 | SNAPC3 | 6619 | RNAseq | -0.8727 | 0.0000 | |
| SRP219564 | SNAPC3 | 6619 | RNAseq | -0.7762 | 0.0103 | |
| TCGA | SNAPC3 | 6619 | RNAseq | -0.1859 | 0.0024 |
Upregulated datasets: 0; Downregulated datasets: 0.
Survival by SNAPC3 expression:
 |  |  |
| GSE53622 | GSE53624 | TCGA |
Note: Click image to view full size file.
Copy number change of SNAPC3:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | SNAPC3 | 6619 | 2 | 16 | 12 | |
| GSE20123 | SNAPC3 | 6619 | 2 | 16 | 12 | |
| GSE43470 | SNAPC3 | 6619 | 5 | 11 | 27 | |
| GSE46452 | SNAPC3 | 6619 | 2 | 23 | 34 | |
| GSE47630 | SNAPC3 | 6619 | 4 | 26 | 10 | |
| GSE54993 | SNAPC3 | 6619 | 6 | 3 | 61 | |
| GSE54994 | SNAPC3 | 6619 | 10 | 16 | 27 | |
| GSE60625 | SNAPC3 | 6619 | 0 | 0 | 11 | |
| GSE74703 | SNAPC3 | 6619 | 5 | 8 | 23 | |
| GSE74704 | SNAPC3 | 6619 | 0 | 13 | 7 | |
| TCGA | SNAPC3 | 6619 | 13 | 50 | 33 |
Total number of gains: 49; Total number of losses: 182; Total Number of normals: 257.
Somatic mutations of SNAPC3:
Generating mutation plots.
Highly correlated genes for SNAPC3:
Showing top 20/923 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| SNAPC3 | HADHB | 0.755408 | 3 | 0 | 3 |
| SNAPC3 | OFD1 | 0.750941 | 3 | 0 | 3 |
| SNAPC3 | FAM83D | 0.748218 | 3 | 0 | 3 |
| SNAPC3 | HDHD2 | 0.744178 | 4 | 0 | 3 |
| SNAPC3 | SENP6 | 0.740728 | 3 | 0 | 3 |
| SNAPC3 | MACROD2 | 0.730111 | 3 | 0 | 3 |
| SNAPC3 | BRK1 | 0.729428 | 5 | 0 | 5 |
| SNAPC3 | RUFY3 | 0.729248 | 4 | 0 | 4 |
| SNAPC3 | ZNF383 | 0.72887 | 3 | 0 | 3 |
| SNAPC3 | KRR1 | 0.72819 | 3 | 0 | 3 |
| SNAPC3 | OSBPL10 | 0.724122 | 4 | 0 | 4 |
| SNAPC3 | COG6 | 0.720582 | 3 | 0 | 3 |
| SNAPC3 | ZNF844 | 0.715759 | 5 | 0 | 5 |
| SNAPC3 | GRPEL2 | 0.714398 | 3 | 0 | 3 |
| SNAPC3 | GNAI3 | 0.714096 | 5 | 0 | 4 |
| SNAPC3 | KLB | 0.710453 | 3 | 0 | 3 |
| SNAPC3 | HBP1 | 0.709445 | 5 | 0 | 5 |
| SNAPC3 | EPG5 | 0.707363 | 5 | 0 | 4 |
| SNAPC3 | FBXL3 | 0.705642 | 5 | 0 | 4 |
| SNAPC3 | NUDT9 | 0.704679 | 3 | 0 | 3 |
For details and further investigation, click here
