| Full name: SND1 intronic transcript 1 | Alias Symbol: NAG8|NSG-X | ||
| Type: non-coding RNA | Cytoband: 7q32.1 | ||
| Entrez ID: 27099 | HGNC ID: HGNC:24158 | Ensembl Gene: ENSG00000279078 | OMIM ID: |
Expression of SND1-IT1:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | SND1-IT1 | 27099 | 210109_at | 0.4361 | 0.3710 | |
| GSE20347 | SND1-IT1 | 27099 | 210109_at | 0.4080 | 0.0096 | |
| GSE23400 | SND1-IT1 | 27099 | 210109_at | 0.2609 | 0.0000 | |
| GSE26886 | SND1-IT1 | 27099 | 210109_at | 0.3104 | 0.1622 | |
| GSE29001 | SND1-IT1 | 27099 | 210109_at | 0.3783 | 0.1080 | |
| GSE38129 | SND1-IT1 | 27099 | 210109_at | 0.3740 | 0.0083 | |
| GSE45670 | SND1-IT1 | 27099 | 210109_at | 0.4666 | 0.0031 | |
| GSE53622 | SND1-IT1 | 27099 | 16154 | 0.8601 | 0.0000 | |
| GSE53624 | SND1-IT1 | 27099 | 16154 | 0.6561 | 0.0000 | |
| GSE63941 | SND1-IT1 | 27099 | 210109_at | -0.1213 | 0.6703 | |
| GSE77861 | SND1-IT1 | 27099 | 210109_at | 0.1523 | 0.3184 | |
| SRP133303 | SND1-IT1 | 27099 | RNAseq | 0.8172 | 0.0001 | |
| SRP193095 | SND1-IT1 | 27099 | RNAseq | 0.5222 | 0.0121 |
Upregulated datasets: 0; Downregulated datasets: 0.
Survival by SND1-IT1 expression:
 |  |
| GSE53622 | GSE53624 |
Note: Click image to view full size file.
Copy number change of SND1-IT1:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | SND1-IT1 | 27099 | 7 | 1 | 22 | |
| GSE20123 | SND1-IT1 | 27099 | 7 | 2 | 21 | |
| GSE43470 | SND1-IT1 | 27099 | 2 | 3 | 38 | |
| GSE46452 | SND1-IT1 | 27099 | 7 | 2 | 50 | |
| GSE47630 | SND1-IT1 | 27099 | 7 | 4 | 29 | |
| GSE54993 | SND1-IT1 | 27099 | 3 | 5 | 62 | |
| GSE54994 | SND1-IT1 | 27099 | 9 | 7 | 37 | |
| GSE60625 | SND1-IT1 | 27099 | 0 | 0 | 11 | |
| GSE74703 | SND1-IT1 | 27099 | 2 | 3 | 31 | |
| GSE74704 | SND1-IT1 | 27099 | 3 | 2 | 15 |
Total number of gains: 47; Total number of losses: 29; Total Number of normals: 316.
Somatic mutations of SND1-IT1:
Generating mutation plots.
Highly correlated genes for SND1-IT1:
Showing top 20/275 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| SND1-IT1 | GSTCD | 0.678509 | 3 | 0 | 3 |
| SND1-IT1 | ASAP1-IT1 | 0.670752 | 5 | 0 | 4 |
| SND1-IT1 | MTBP | 0.650217 | 3 | 0 | 3 |
| SND1-IT1 | SIN3B | 0.644051 | 6 | 0 | 5 |
| SND1-IT1 | PNMA3 | 0.643007 | 3 | 0 | 3 |
| SND1-IT1 | AREL1 | 0.640903 | 4 | 0 | 3 |
| SND1-IT1 | PABPC1L | 0.640568 | 5 | 0 | 5 |
| SND1-IT1 | PRCC | 0.625924 | 3 | 0 | 3 |
| SND1-IT1 | AKAP8L | 0.61866 | 5 | 0 | 3 |
| SND1-IT1 | PILRA | 0.616739 | 4 | 0 | 4 |
| SND1-IT1 | RHPN1 | 0.615664 | 3 | 0 | 3 |
| SND1-IT1 | DCAF13 | 0.615622 | 7 | 0 | 7 |
| SND1-IT1 | ZNF786 | 0.612852 | 3 | 0 | 3 |
| SND1-IT1 | INPP5E | 0.609491 | 3 | 0 | 3 |
| SND1-IT1 | NRL | 0.608483 | 3 | 0 | 3 |
| SND1-IT1 | MIER2 | 0.60772 | 3 | 0 | 3 |
| SND1-IT1 | SMCR5 | 0.607473 | 4 | 0 | 3 |
| SND1-IT1 | MBD4 | 0.607109 | 7 | 0 | 5 |
| SND1-IT1 | BEND3 | 0.606305 | 4 | 0 | 3 |
| SND1-IT1 | APBA3 | 0.605422 | 5 | 0 | 4 |
For details and further investigation, click here
