| Full name: sorting nexin family member 30 | Alias Symbol: ATG24A | ||
| Type: protein-coding gene | Cytoband: 9q32 | ||
| Entrez ID: 401548 | HGNC ID: HGNC:23685 | Ensembl Gene: ENSG00000148158 | OMIM ID: |
| Drug and gene relationship at DGIdb | |||
Expression of SNX30:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | SNX30 | 401548 | 226249_at | 0.6296 | 0.1818 | |
| GSE26886 | SNX30 | 401548 | 226249_at | -0.3814 | 0.2425 | |
| GSE45670 | SNX30 | 401548 | 226249_at | 0.2774 | 0.1228 | |
| GSE53622 | SNX30 | 401548 | 18940 | 0.3184 | 0.0000 | |
| GSE53624 | SNX30 | 401548 | 57497 | 0.3928 | 0.0000 | |
| GSE63941 | SNX30 | 401548 | 226249_at | -0.6271 | 0.3545 | |
| GSE77861 | SNX30 | 401548 | 226249_at | 0.1733 | 0.5826 | |
| GSE97050 | SNX30 | 401548 | A_33_P3256168 | 0.4338 | 0.1496 | |
| SRP007169 | SNX30 | 401548 | RNAseq | 1.1213 | 0.0127 | |
| SRP008496 | SNX30 | 401548 | RNAseq | 1.0936 | 0.0000 | |
| SRP064894 | SNX30 | 401548 | RNAseq | 0.4653 | 0.0431 | |
| SRP133303 | SNX30 | 401548 | RNAseq | 0.3219 | 0.1249 | |
| SRP159526 | SNX30 | 401548 | RNAseq | 0.2921 | 0.2950 | |
| SRP193095 | SNX30 | 401548 | RNAseq | 0.1155 | 0.2171 | |
| SRP219564 | SNX30 | 401548 | RNAseq | -0.0007 | 0.9984 | |
| TCGA | SNX30 | 401548 | RNAseq | 0.0504 | 0.4174 |
Upregulated datasets: 2; Downregulated datasets: 0.
Survival by SNX30 expression:
 |  |  |
| GSE53622 | GSE53624 | TCGA |
Note: Click image to view full size file.
Copy number change of SNX30:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | SNX30 | 401548 | 5 | 10 | 15 | |
| GSE20123 | SNX30 | 401548 | 5 | 10 | 15 | |
| GSE43470 | SNX30 | 401548 | 4 | 3 | 36 | |
| GSE46452 | SNX30 | 401548 | 6 | 13 | 40 | |
| GSE47630 | SNX30 | 401548 | 3 | 16 | 21 | |
| GSE54993 | SNX30 | 401548 | 3 | 3 | 64 | |
| GSE54994 | SNX30 | 401548 | 9 | 10 | 34 | |
| GSE60625 | SNX30 | 401548 | 0 | 0 | 11 | |
| GSE74703 | SNX30 | 401548 | 4 | 3 | 29 | |
| GSE74704 | SNX30 | 401548 | 2 | 8 | 10 | |
| TCGA | SNX30 | 401548 | 26 | 22 | 48 |
Total number of gains: 67; Total number of losses: 98; Total Number of normals: 323.
Somatic mutations of SNX30:
Generating mutation plots.
Highly correlated genes for SNX30:
Showing top 20/410 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| SNX30 | ARFGEF2 | 0.825998 | 3 | 0 | 3 |
| SNX30 | USP38 | 0.815436 | 3 | 0 | 3 |
| SNX30 | ZKSCAN4 | 0.780733 | 3 | 0 | 3 |
| SNX30 | SMC2 | 0.778495 | 3 | 0 | 3 |
| SNX30 | C12orf73 | 0.773447 | 3 | 0 | 3 |
| SNX30 | BUB1 | 0.767384 | 3 | 0 | 3 |
| SNX30 | PPP1R3D | 0.757891 | 3 | 0 | 3 |
| SNX30 | KBTBD7 | 0.743419 | 3 | 0 | 3 |
| SNX30 | NUP54 | 0.743031 | 3 | 0 | 3 |
| SNX30 | SMG8 | 0.74121 | 4 | 0 | 3 |
| SNX30 | NAA30 | 0.732789 | 3 | 0 | 3 |
| SNX30 | HPS4 | 0.716906 | 3 | 0 | 3 |
| SNX30 | MIS18A | 0.71661 | 4 | 0 | 3 |
| SNX30 | GNS | 0.715088 | 3 | 0 | 3 |
| SNX30 | ZNF318 | 0.714158 | 3 | 0 | 3 |
| SNX30 | RAD21 | 0.714032 | 3 | 0 | 3 |
| SNX30 | BLCAP | 0.712284 | 3 | 0 | 3 |
| SNX30 | PROSER1 | 0.712147 | 3 | 0 | 3 |
| SNX30 | PIK3CA | 0.711135 | 3 | 0 | 3 |
| SNX30 | GK5 | 0.708034 | 3 | 0 | 3 |
For details and further investigation, click here
