| Full name: SOX9 antisense RNA 1 | Alias Symbol: FLJ37644 | ||
| Type: non-coding RNA | Cytoband: 17q24.3 | ||
| Entrez ID: 400618 | HGNC ID: HGNC:49321 | Ensembl Gene: ENSG00000234899 | OMIM ID: |
Expression of SOX9-AS1:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | SOX9-AS1 | 400618 | 230419_at | -0.0597 | 0.9165 | |
| GSE26886 | SOX9-AS1 | 400618 | 230419_at | 0.2197 | 0.1169 | |
| GSE45670 | SOX9-AS1 | 400618 | 230419_at | -0.0356 | 0.7540 | |
| GSE53622 | SOX9-AS1 | 400618 | 53343 | -1.4716 | 0.0000 | |
| GSE53624 | SOX9-AS1 | 400618 | 53343 | -1.1743 | 0.0000 | |
| GSE63941 | SOX9-AS1 | 400618 | 230419_at | -0.1861 | 0.5007 | |
| GSE77861 | SOX9-AS1 | 400618 | 230419_at | 0.0029 | 0.9796 | |
| SRP007169 | SOX9-AS1 | 400618 | RNAseq | 0.5811 | 0.4296 | |
| SRP064894 | SOX9-AS1 | 400618 | RNAseq | -0.4753 | 0.0454 | |
| SRP133303 | SOX9-AS1 | 400618 | RNAseq | 0.1523 | 0.3357 | |
| SRP159526 | SOX9-AS1 | 400618 | RNAseq | 0.3957 | 0.4484 | |
| SRP193095 | SOX9-AS1 | 400618 | RNAseq | 0.3033 | 0.0329 | |
| SRP219564 | SOX9-AS1 | 400618 | RNAseq | -0.1448 | 0.7486 |
Upregulated datasets: 0; Downregulated datasets: 2.
Survival by SOX9-AS1 expression:
 |  |
| GSE53622 | GSE53624 |
Note: Click image to view full size file.
Copy number change of SOX9-AS1:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | SOX9-AS1 | 400618 | 3 | 2 | 25 | |
| GSE20123 | SOX9-AS1 | 400618 | 3 | 2 | 25 | |
| GSE43470 | SOX9-AS1 | 400618 | 6 | 3 | 34 | |
| GSE46452 | SOX9-AS1 | 400618 | 32 | 0 | 27 | |
| GSE47630 | SOX9-AS1 | 400618 | 8 | 1 | 31 | |
| GSE54993 | SOX9-AS1 | 400618 | 2 | 5 | 63 | |
| GSE54994 | SOX9-AS1 | 400618 | 10 | 4 | 39 | |
| GSE60625 | SOX9-AS1 | 400618 | 6 | 0 | 5 | |
| GSE74703 | SOX9-AS1 | 400618 | 6 | 1 | 29 | |
| GSE74704 | SOX9-AS1 | 400618 | 3 | 2 | 15 |
Total number of gains: 79; Total number of losses: 20; Total Number of normals: 293.
Somatic mutations of SOX9-AS1:
Generating mutation plots.
Highly correlated genes for SOX9-AS1:
Showing top 20/23 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| SOX9-AS1 | PTPN22 | 0.701047 | 3 | 0 | 3 |
| SOX9-AS1 | BTBD9 | 0.679497 | 3 | 0 | 3 |
| SOX9-AS1 | UHRF2 | 0.670509 | 3 | 0 | 3 |
| SOX9-AS1 | CUEDC1 | 0.666689 | 4 | 0 | 4 |
| SOX9-AS1 | MOV10L1 | 0.662065 | 3 | 0 | 3 |
| SOX9-AS1 | NR3C2 | 0.656865 | 3 | 0 | 3 |
| SOX9-AS1 | ZNF235 | 0.653002 | 3 | 0 | 3 |
| SOX9-AS1 | BCAS1 | 0.619669 | 3 | 0 | 3 |
| SOX9-AS1 | MASP2 | 0.613341 | 4 | 0 | 3 |
| SOX9-AS1 | C7 | 0.611153 | 4 | 0 | 4 |
| SOX9-AS1 | PXMP2 | 0.610368 | 3 | 0 | 3 |
| SOX9-AS1 | NKX2-3 | 0.599726 | 4 | 0 | 3 |
| SOX9-AS1 | HMGCS2 | 0.593427 | 4 | 0 | 3 |
| SOX9-AS1 | TMEM80 | 0.592823 | 3 | 0 | 3 |
| SOX9-AS1 | RALGPS2 | 0.59097 | 3 | 0 | 3 |
| SOX9-AS1 | TAS2R14 | 0.578343 | 5 | 0 | 4 |
| SOX9-AS1 | ZNF449 | 0.568291 | 4 | 0 | 3 |
| SOX9-AS1 | SORBS2 | 0.554126 | 4 | 0 | 3 |
| SOX9-AS1 | ITGB1BP2 | 0.551973 | 5 | 0 | 4 |
| SOX9-AS1 | CAPN9 | 0.547069 | 4 | 0 | 3 |
For details and further investigation, click here
