| Full name: transmembrane 4 L six family member 20 | Alias Symbol: FLJ22800|TCCE518 | ||
| Type: protein-coding gene | Cytoband: 2q36.3 | ||
| Entrez ID: 79853 | HGNC ID: HGNC:26230 | Ensembl Gene: ENSG00000168955 | OMIM ID: 615404 |
| Drug and gene relationship at DGIdb | |||
Expression of TM4SF20:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | TM4SF20 | 79853 | 220639_at | 0.0581 | 0.7963 | |
| GSE20347 | TM4SF20 | 79853 | 220639_at | 0.0753 | 0.1621 | |
| GSE23400 | TM4SF20 | 79853 | 220639_at | 0.0043 | 0.8719 | |
| GSE26886 | TM4SF20 | 79853 | 220639_at | 0.0642 | 0.6298 | |
| GSE29001 | TM4SF20 | 79853 | 220639_at | -0.1260 | 0.2433 | |
| GSE38129 | TM4SF20 | 79853 | 220639_at | -0.0202 | 0.7403 | |
| GSE45670 | TM4SF20 | 79853 | 220639_at | -0.1309 | 0.1610 | |
| GSE53622 | TM4SF20 | 79853 | 93176 | 0.0388 | 0.8172 | |
| GSE53624 | TM4SF20 | 79853 | 93176 | -0.3303 | 0.0030 | |
| GSE63941 | TM4SF20 | 79853 | 220639_at | 0.0054 | 0.9733 | |
| GSE77861 | TM4SF20 | 79853 | 220639_at | 0.0113 | 0.9544 | |
| SRP133303 | TM4SF20 | 79853 | RNAseq | 0.1554 | 0.5098 | |
| SRP193095 | TM4SF20 | 79853 | RNAseq | -0.7416 | 0.0411 | |
| TCGA | TM4SF20 | 79853 | RNAseq | -0.2898 | 0.7321 |
Upregulated datasets: 0; Downregulated datasets: 0.
Survival by TM4SF20 expression:
 |  |  |
| GSE53622 | GSE53624 | TCGA |
Note: Click image to view full size file.
Copy number change of TM4SF20:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | TM4SF20 | 79853 | 2 | 12 | 16 | |
| GSE20123 | TM4SF20 | 79853 | 2 | 12 | 16 | |
| GSE43470 | TM4SF20 | 79853 | 0 | 7 | 36 | |
| GSE46452 | TM4SF20 | 79853 | 0 | 5 | 54 | |
| GSE47630 | TM4SF20 | 79853 | 4 | 5 | 31 | |
| GSE54993 | TM4SF20 | 79853 | 1 | 2 | 67 | |
| GSE54994 | TM4SF20 | 79853 | 6 | 11 | 36 | |
| GSE60625 | TM4SF20 | 79853 | 0 | 3 | 8 | |
| GSE74703 | TM4SF20 | 79853 | 0 | 6 | 30 | |
| GSE74704 | TM4SF20 | 79853 | 2 | 6 | 12 | |
| TCGA | TM4SF20 | 79853 | 13 | 26 | 57 |
Total number of gains: 30; Total number of losses: 95; Total Number of normals: 363.
Somatic mutations of TM4SF20:
Generating mutation plots.
Highly correlated genes for TM4SF20:
Showing top 20/214 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| TM4SF20 | LINC00598 | 0.694519 | 3 | 0 | 3 |
| TM4SF20 | FGF18 | 0.687345 | 4 | 0 | 4 |
| TM4SF20 | DCDC2B | 0.680443 | 4 | 0 | 4 |
| TM4SF20 | RAB3IL1 | 0.678477 | 4 | 0 | 4 |
| TM4SF20 | MYL7 | 0.654937 | 3 | 0 | 3 |
| TM4SF20 | REG3A | 0.65142 | 5 | 0 | 4 |
| TM4SF20 | CACNA1H | 0.645496 | 3 | 0 | 3 |
| TM4SF20 | FGF4 | 0.638755 | 3 | 0 | 3 |
| TM4SF20 | SPRED3 | 0.637745 | 3 | 0 | 3 |
| TM4SF20 | GRM8 | 0.623136 | 4 | 0 | 3 |
| TM4SF20 | SYNDIG1L | 0.620788 | 3 | 0 | 3 |
| TM4SF20 | ATAD3C | 0.618979 | 3 | 0 | 3 |
| TM4SF20 | NOXA1 | 0.615183 | 3 | 0 | 3 |
| TM4SF20 | KLF16 | 0.612941 | 3 | 0 | 3 |
| TM4SF20 | TSC22D4 | 0.612301 | 4 | 0 | 4 |
| TM4SF20 | LINC00475 | 0.612172 | 4 | 0 | 3 |
| TM4SF20 | DRD4 | 0.61087 | 4 | 0 | 4 |
| TM4SF20 | CCL7 | 0.606224 | 3 | 0 | 3 |
| TM4SF20 | LRTM1 | 0.604437 | 5 | 0 | 3 |
| TM4SF20 | SHOX | 0.603803 | 3 | 0 | 3 |
For details and further investigation, click here
