| Full name: trafficking protein particle complex 4 | Alias Symbol: TRS23|SBDN|PTD009 | ||
| Type: protein-coding gene | Cytoband: 11q23.3 | ||
| Entrez ID: 51399 | HGNC ID: HGNC:19943 | Ensembl Gene: ENSG00000196655 | OMIM ID: 610971 |
| Drug and gene relationship at DGIdb | |||
Expression of TRAPPC4:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE53622 | TRAPPC4 | 51399 | 156105 | 0.1123 | 0.0893 | |
| GSE53624 | TRAPPC4 | 51399 | 75957 | 0.1420 | 0.0898 | |
| GSE97050 | TRAPPC4 | 51399 | A_23_P127613 | 0.0459 | 0.8696 | |
| SRP007169 | TRAPPC4 | 51399 | RNAseq | -0.4998 | 0.2324 | |
| SRP008496 | TRAPPC4 | 51399 | RNAseq | -0.0597 | 0.8451 | |
| SRP064894 | TRAPPC4 | 51399 | RNAseq | 0.1063 | 0.5935 | |
| SRP133303 | TRAPPC4 | 51399 | RNAseq | -0.1101 | 0.4079 | |
| SRP159526 | TRAPPC4 | 51399 | RNAseq | -0.0744 | 0.8413 | |
| SRP193095 | TRAPPC4 | 51399 | RNAseq | -0.4576 | 0.0055 | |
| SRP219564 | TRAPPC4 | 51399 | RNAseq | -0.2104 | 0.3845 | |
| TCGA | TRAPPC4 | 51399 | RNAseq | -0.1057 | 0.0993 |
Upregulated datasets: 0; Downregulated datasets: 0.
Survival by TRAPPC4 expression:
 |  |  |
| GSE53622 | GSE53624 | TCGA |
Note: Click image to view full size file.
Copy number change of TRAPPC4:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | TRAPPC4 | 51399 | 1 | 11 | 18 | |
| GSE20123 | TRAPPC4 | 51399 | 1 | 11 | 18 | |
| GSE43470 | TRAPPC4 | 51399 | 2 | 8 | 33 | |
| GSE46452 | TRAPPC4 | 51399 | 3 | 26 | 30 | |
| GSE47630 | TRAPPC4 | 51399 | 2 | 19 | 19 | |
| GSE54993 | TRAPPC4 | 51399 | 10 | 0 | 60 | |
| GSE54994 | TRAPPC4 | 51399 | 5 | 19 | 29 | |
| GSE60625 | TRAPPC4 | 51399 | 0 | 3 | 8 | |
| GSE74703 | TRAPPC4 | 51399 | 1 | 5 | 30 | |
| GSE74704 | TRAPPC4 | 51399 | 0 | 7 | 13 | |
| TCGA | TRAPPC4 | 51399 | 4 | 51 | 41 |
Total number of gains: 29; Total number of losses: 160; Total Number of normals: 299.
Somatic mutations of TRAPPC4:
Generating mutation plots.
Highly correlated genes for TRAPPC4:
Showing all 17 correlated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| TRAPPC4 | RPUSD4 | 0.74244 | 3 | 0 | 3 |
| TRAPPC4 | CUL5 | 0.727995 | 3 | 0 | 3 |
| TRAPPC4 | MRPL27 | 0.6914 | 3 | 0 | 3 |
| TRAPPC4 | PSMA5 | 0.691157 | 3 | 0 | 3 |
| TRAPPC4 | PRDX4 | 0.666529 | 3 | 0 | 3 |
| TRAPPC4 | SCO1 | 0.650176 | 4 | 0 | 4 |
| TRAPPC4 | GPN1 | 0.642988 | 3 | 0 | 3 |
| TRAPPC4 | CBL | 0.639926 | 4 | 0 | 3 |
| TRAPPC4 | ARCN1 | 0.635547 | 4 | 0 | 3 |
| TRAPPC4 | ZW10 | 0.624418 | 4 | 0 | 3 |
| TRAPPC4 | DPAGT1 | 0.621239 | 4 | 0 | 3 |
| TRAPPC4 | KTI12 | 0.614163 | 4 | 0 | 3 |
| TRAPPC4 | CHCHD5 | 0.593057 | 4 | 0 | 3 |
| TRAPPC4 | MRPL14 | 0.578467 | 4 | 0 | 3 |
| TRAPPC4 | HSPA8 | 0.543651 | 4 | 0 | 3 |
| TRAPPC4 | STT3A | 0.518106 | 4 | 0 | 3 |
| TRAPPC4 | DLAT | 0.500618 | 4 | 0 | 3 |
For details and further investigation, click here
